Rmu_sc0006930.1_g000001

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006930.1
OG0002304
Physical Location & Seq
Forward (+)
1 .. 755
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006930.1_g000001.1.cds

Sequence Viewer

Length: 209 bp
atagtaattactacaagtacgtcggcaggcttagatcagattttaccatggatgttttatcacaaggttattggagtttccaccttttttcttttttatcggaaggaaaggctgcgtctcctgaagtatccaaagttctggagtctatacctggagtaaaattgatatacagaacaaaggagctcgaggagcaacaagctagaaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

68

Amino Acids

7.94

Weight (kDa)

9.05

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 183, 199
AluI AGCT 2 cut(s) 183, 199
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 184
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 99
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 138
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 2 cut(s) 160, 173
BsaJI CCNNGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 122
BsmBI CGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 28
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 48
CviJI RGCY 4 cut(s) 30, 112, 183, 199
CviKI_1 RGCY 4 cut(s) 30, 112, 183, 199
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 31
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 1 cut(s) 51
FaiI YATR 3 cut(s) 49, 148, 168
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 113
GsuI CTGGAG 2 cut(s) 160, 173
HgaI GACGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 51
HinfI GANTC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 39, 102
Hpy188III TCNNGA 2 cut(s) 121, 139
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 97, 197
HpyCH4IV ACGT 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 180, 189
LpnPI CCDG 5 cut(s) 12, 124, 134, 137, 164
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 20
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 2 cut(s) 6, 160
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 189
NcoI CCATGG 1 cut(s) 47
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 184
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SacI GAGCTC 1 cut(s) 185
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 23, 69, 86, 153, 185, 201, 208
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 6, 160
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 6, 160
TseI GCWGC 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 184
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.