RLG00000030487

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002304
Physical Location & Seq
Forward (+)
62384255 .. 62387828
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030487

Sequence Viewer

Length: 957 bp
ATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGAGAGCAGTGTTGAACGAGATGATATTAAGGAACCTTTTACCGAGGTATCCATGTTCAAGAAGAATTACGATCATGTACCGAAAGATACATACTTTGGAATGTACAAAGAATCAACTCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGGGAAATCAGCTGCTCGAATCCAAGATCATCTCCGTCCTAATGGCGCACACAGATGGCACAATTATATGAAAACCCCTAATGAGGTCAAATTGGAAGAGGCTGCTGTTCTACACTACACATATGCCAAATTTTCAGACTTAACGTCACGACGTGATCGGTGTGGCTGCAAGCCTACAAGGGAAGATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTGCATTCATAATTGCTTCAACTGCAACTGAGGAGGAAATGCTCAAATGGTATCATGAACACATTGTATGGGATGACAAAGATATAAGAATAAAACTTTTGAGGAAAGGCATCTTGACTCGAATATATGCTCCAATGGCCATAATCCAAGGACTAAAGGAGTCGGGAGTCTTCAGCTCTGTTATTGCATCTGCCTCAACTACACTCTCAAAGGAAAAGTTCTTGGCAACAATTGATAGTAGTAACTCCTCTAGAGCTACTGCCTCTATATCCCACCCGTCGAGGAAGATTAGTAGAAGCAGTGAGAGTATGGCTACTGCCAGGAAGACCTTGGATGTTGAAGTTGCTGAATTCCAAGAACTGGCCGTTCCACCATTATCCCCTCCGGTAATGGATGATAACCAGCTCAGCTTTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

319

Amino Acids

36.25

Weight (kDa)

6.09

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 895
AcoI YGGCCR 2 cut(s) 672, 897
AcsI RAATTY 3 cut(s) 443, 524, 884
AcuI CTGAAG 1 cut(s) 691
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 240, 266
AfiI CCNNNNNNNGG 2 cut(s) 397, 895
AgsI TTSAA 5 cut(s) 176, 220, 555, 875, 950
AhdI GACNNNNNGTC 1 cut(s) 457
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 2 cut(s) 127, 854
AluBI AGCT 7 cut(s) 83, 326, 536, 711, 791, 940, 945
AluI AGCT 7 cut(s) 83, 326, 536, 711, 791, 940, 945
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 2 cut(s) 672, 897
ApeKI GCWGC 5 cut(s) 115, 326, 416, 480, 536
ApoI RAATTY 3 cut(s) 443, 524, 884
AspLEI GCGC 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 155
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 86
BauI CACGAG 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 697, 866
BbvI GCAGC 5 cut(s) 102, 313, 403, 467, 523
BccI CCATC 1 cut(s) 363
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 2 cut(s) 129, 856
BciVI GTATCC 1 cut(s) 220
BfaI CTAG 1 cut(s) 786
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 5 cut(s) 116, 327, 417, 481, 537
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 5 cut(s) 117, 328, 418, 482, 538
Bme1390I CCNGG 2 cut(s) 129, 856
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgBI CACGTC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 88, 195
BmrFI CCNGG 2 cut(s) 129, 856
BmsI GCATC 4 cut(s) 19, 500, 654, 731
BpiI GAAGAC 2 cut(s) 697, 866
Bpu1102I GCTNAGC 1 cut(s) 941
Bpu14I TTCGAA 1 cut(s) 155
BsaJI CCNNGG 5 cut(s) 90, 128, 204, 682, 864
BsaWI WCCGGW 1 cut(s) 919
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 895
Bse1I ACTGG 2 cut(s) 47, 900
BseBI CCWGG 2 cut(s) 129, 856
BseDI CCNNGG 5 cut(s) 90, 128, 204, 682, 864
BseGI GGATG 4 cut(s) 34, 613, 874, 934
BseLI CCNNNNNNNGG 2 cut(s) 397, 895
BseMII CTCAG 2 cut(s) 555, 955
BseNI ACTGG 2 cut(s) 47, 900
BseRI GAGGAG 2 cut(s) 581, 772
BseXI GCAGC 5 cut(s) 102, 313, 403, 467, 523
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 674, 899
BshNI GGYRCC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 920
BslI CCNNNNNNNGG 2 cut(s) 397, 895
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 2 cut(s) 674, 899
Bsp119I TTCGAA 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 3 cut(s) 232, 340, 469
Bsp1720I GCTNAGC 1 cut(s) 941
BspANI GGCC 2 cut(s) 674, 899
BspCNI CTCAG 2 cut(s) 556, 954
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 88, 195
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 2 cut(s) 47, 900
BssECI CCNNGG 5 cut(s) 90, 128, 204, 682, 864
BssMI GATC 3 cut(s) 232, 340, 469
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 3 cut(s) 90, 682, 864
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 129, 856
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 2 cut(s) 29, 115
BstAUI TGTACA 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 564, 941
BstF5I GGATG 4 cut(s) 34, 613, 874, 934
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 235, 343, 472
BstMBI GATC 3 cut(s) 232, 340, 469
BstMWI GCNNNNNNNGC 5 cut(s) 29, 115, 124, 557, 671
BstNI CCWGG 2 cut(s) 129, 856
BstSCI CCNGG 2 cut(s) 127, 854
BstV1I GCAGC 5 cut(s) 102, 313, 403, 467, 523
BstV2I GAAGAC 2 cut(s) 697, 866
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 674, 899
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 4 cut(s) 34, 613, 874, 934
BtsI GCAGTG 2 cut(s) 175, 841
BtsIMutI CAGTG 2 cut(s) 175, 841
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 1 cut(s) 115
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 239, 265
CviAII CATG 4 cut(s) 214, 236, 517, 590
CviQI GTAC 2 cut(s) 239, 265
DdeI CTNAG 2 cut(s) 564, 941
DpnI GATC 3 cut(s) 234, 342, 471
DpnII GATC 3 cut(s) 232, 340, 469
DraIII CACNNNGTG 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 2 cut(s) 672, 897
Eam1104I CTCTTC 1 cut(s) 405
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 3 cut(s) 90, 682, 864
Eco57I CTGAAG 1 cut(s) 691
EcoRI GAATTC 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 127, 854
EcoT14I CCWWGG 3 cut(s) 90, 682, 864
ErhI CCWWGG 3 cut(s) 90, 682, 864
FaeI CATG 4 cut(s) 217, 239, 520, 593
FatI CATG 4 cut(s) 213, 235, 516, 589
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 5 cut(s) 116, 327, 417, 481, 537
FokI GGATG 4 cut(s) 41, 620, 881, 941
Fsp4HI GCNGC 5 cut(s) 116, 327, 417, 481, 537
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 361
GluI GCNGC 5 cut(s) 116, 327, 417, 481, 537
GsaI CCCAGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 674, 899
HapII CCGG 1 cut(s) 920
HhaI GCGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 217, 239, 520, 593
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HinfI GANTC 5 cut(s) 272, 333, 652, 695, 702
HpaII CCGG 1 cut(s) 920
Hpy188I TCNGA 2 cut(s) 303, 451
Hpy188III TCNNGA 7 cut(s) 56, 220, 462, 590, 649, 699, 786
Hpy99I CGWCG 2 cut(s) 468, 817
HpyCH4IV ACGT 2 cut(s) 458, 466
HpyCH4V TGCA 4 cut(s) 483, 539, 560, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 115, 124, 557, 671
HpyF3I CTNAG 2 cut(s) 564, 941
HpySE526I ACGT 2 cut(s) 458, 466
Hsp92II CATG 4 cut(s) 217, 239, 520, 593
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 232, 340, 469
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 5 cut(s) 102, 313, 403, 467, 523
LweI GCATC 4 cut(s) 19, 500, 654, 731
MaeI CTAG 1 cut(s) 786
MaeII ACGT 2 cut(s) 458, 466
MaeIII GTNAC 3 cut(s) 69, 459, 776
MalI GATC 3 cut(s) 234, 342, 471
MboI GATC 3 cut(s) 232, 340, 469
MboII GAAGA 6 cut(s) 235, 422, 509, 697, 832, 871
MfeI CAATTG 1 cut(s) 765
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 8 cut(s) 226, 376, 404, 443, 524, 546, 765, 884
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 3 cut(s) 646, 704, 711
MmeI TCCRAC 1 cut(s) 501
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 2 cut(s) 189, 455
MslI CAYNNNNRTG 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 2 cut(s) 83, 326
MspI CCGG 1 cut(s) 920
MspR9I CCNGG 2 cut(s) 129, 856
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 2 cut(s) 129, 856
MwoI GCNNNNNNNGC 5 cut(s) 29, 115, 124, 557, 671
NdeI CATATG 1 cut(s) 436
NdeII GATC 3 cut(s) 232, 340, 469
NlaIII CATG 4 cut(s) 217, 239, 520, 593
NlaIV GGNNCC 2 cut(s) 88, 195
NmuCI GTSAC 1 cut(s) 459
NspV TTCGAA 1 cut(s) 155
PagI TCATGA 1 cut(s) 589
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 272, 333
PflMI CCANNNNNTGG 1 cut(s) 895
PkrI GCNGC 5 cut(s) 117, 328, 418, 482, 538
PleI GAGTC 3 cut(s) 646, 703, 710
PpsI GAGTC 3 cut(s) 646, 703, 710
Psp6I CCWGG 2 cut(s) 127, 854
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 127, 854
PspN4I GGNNCC 2 cut(s) 88, 195
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 2 cut(s) 83, 326
RsaI GTAC 2 cut(s) 240, 266
RsaNI GTAC 2 cut(s) 239, 265
RseI CAYNNNNRTG 1 cut(s) 367
SaqAI TTAA 2 cut(s) 189, 455
SatI GCNGC 5 cut(s) 116, 327, 417, 481, 537
Sau3AI GATC 3 cut(s) 232, 340, 469
SchI GAGTC 3 cut(s) 646, 704, 711
ScrFI CCNGG 2 cut(s) 129, 856
SfaNI GCATC 4 cut(s) 19, 500, 654, 731
SfuI TTCGAA 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 367
Sse9I AATT 8 cut(s) 226, 376, 404, 443, 524, 546, 765, 884
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 127, 854
StyI CCWWGG 3 cut(s) 90, 682, 864
TaiI ACGT 2 cut(s) 461, 469
TaqI TCGA 4 cut(s) 155, 331, 655, 815
TasI AATT 8 cut(s) 226, 376, 404, 443, 524, 546, 765, 884
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 2 cut(s) 272, 333
Tru1I TTAA 2 cut(s) 189, 455
Tru9I TTAA 2 cut(s) 189, 455
TscAI CASTG 2 cut(s) 175, 841
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 5 cut(s) 115, 326, 416, 480, 536
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 5 cut(s) 41, 398, 505, 532, 606
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 2 cut(s) 175, 841
Van91I CCANNNNNTGG 1 cut(s) 895
XapI RAATTY 3 cut(s) 443, 524, 884
XbaI TCTAGA 1 cut(s) 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.