pycom02g25000

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002304
Physical Location & Seq
Forward (+)
23053980 .. 23055676
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g25000.1

Sequence Viewer

Length: 537 bp
ATGCCCCCCCTCCGCTCAGCGCCAGCATCCTCCTCCTCCTCCCCTCAAACCTTCACATCGAAGCTCCTCCTCCTCCTCACTCTCCTCCCCCCCTCTCTCGCTGCCTTAGCTTTCATCCTGCAATGGCGTGGCGGCATTCCCGACCCCACCACTCGCTGGTCTCCTCGCGGTTCCCACCACCTCTTCCCTGGCATGGACGCCTCTCCTCTTTCCTCCGCCGTCGTCCACTCCTCCTCCTCCGATTGCCTCAATCTCGGCCCTTCAGCTTTGCCTTCGATTCCCTACTATCAGAATTGGAAGTTTGATTCTGTATCCAATTTACGACCAAAGATATGTTTTACTACAAGTATGTCAGCTGGTTTAGAACAGATTTTGCCGTGGATGTTTTATCACAAGGTTATTGGAGTTACTACCTTTTTCCTATTTGTGGAAGGAAAGGCTGCATCCCCTGAAATATCAAAAGTTCTCGAGTCTATTCCTGGAGTAAAGGTGATATACAGAACTAAAGAGCTTGAGGAACAACAAGCTAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

179

Amino Acids

19.53

Weight (kDa)

9.39

Isoelectric Point (pI)

72.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 156
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 1 cut(s) 168
AciI CCGC 4 cut(s) 13, 132, 168, 216
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 156, 193, 427
AjnI CCWGG 2 cut(s) 187, 478
AluBI AGCT 6 cut(s) 64, 110, 266, 356, 511, 527
AluI AGCT 6 cut(s) 64, 110, 266, 356, 511, 527
Alw26I GTCTC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 101, 440
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 502
AvaI CYCGRG 1 cut(s) 467
BbvI GCAGC 2 cut(s) 88, 427
BceAI ACGGC 2 cut(s) 203, 361
BciT130I CCWGG 2 cut(s) 189, 480
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 3 cut(s) 102, 133, 441
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 3 cut(s) 103, 134, 442
Bme1390I CCNGG 2 cut(s) 189, 480
BmeT110I CYCGRG 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 189, 480
BmsI GCATC 2 cut(s) 35, 452
BpmI CTGGAG 1 cut(s) 501
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 187, 377
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 193, 427
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 189, 480
BseDI CCNNGG 2 cut(s) 187, 377
BseGI GGATG 4 cut(s) 26, 114, 387, 443
BseLI CCNNNNNNNGG 3 cut(s) 156, 193, 427
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 88, 427
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 467
BslI CCNNNNNNNGG 3 cut(s) 156, 193, 427
BsmAI GTCTC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 467
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 4 cut(s) 13, 132, 168, 216
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 187, 377
BssNI GRCGYC 1 cut(s) 198
Bst2UI CCWGG 2 cut(s) 189, 480
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 16, 106
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 26, 114, 387, 443
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 2 cut(s) 189, 480
BstSCI CCNGG 2 cut(s) 187, 478
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 88, 427
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 4 cut(s) 26, 114, 387, 443
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 206
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 64, 110, 258, 266, 356, 440, 511, 527
CviKI_1 RGCY 8 cut(s) 64, 110, 258, 266, 356, 440, 511, 527
DdeI CTNAG 2 cut(s) 16, 106
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 187, 478
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 194, 334, 350, 496
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 102, 133, 441
FokI GGATG 4 cut(s) 13, 101, 394, 430
Fsp4HI GCNGC 3 cut(s) 102, 133, 441
GlaI GCGC 1 cut(s) 21
GluI GCNGC 3 cut(s) 102, 133, 441
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 1 cut(s) 258
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 3 cut(s) 277, 305, 470
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 241, 291
Hpy188III TCNNGA 2 cut(s) 140, 467
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 61, 270, 282, 425
HpyCH4V TGCA 2 cut(s) 121, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 16, 106
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 36, 131, 142, 174, 201, 342, 462, 465, 492
Lsp1109I GCAGC 2 cut(s) 88, 427
LweI GCATC 2 cut(s) 35, 452
MaeIII GTNAC 1 cut(s) 406
MbiI CCGCTC 1 cut(s) 15
MboII GAAGA 1 cut(s) 175
MluCI AATT 2 cut(s) 292, 316
MlyI GAGTC 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 189, 480
Mva1269I GAATGC 1 cut(s) 135
MvaI CCWGG 2 cut(s) 189, 480
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 467
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 277, 305
PflMI CCANNNNNTGG 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 3 cut(s) 103, 134, 442
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 187, 478
PspGI CCWGG 2 cut(s) 187, 478
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 356
SatI GCNGC 3 cut(s) 102, 133, 441
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 2 cut(s) 189, 480
SfaNI GCATC 2 cut(s) 35, 452
Sfr274I CTCGAG 1 cut(s) 467
SlaI CTCGAG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 467, 512
SmoI CTYRAG 2 cut(s) 467, 512
Sse9I AATT 2 cut(s) 292, 316
SsiI CCGC 4 cut(s) 13, 132, 168, 216
StyD4I CCNGG 2 cut(s) 187, 478
TaqI TCGA 3 cut(s) 59, 275, 468
TasI AATT 2 cut(s) 292, 316
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 2 cut(s) 277, 305
TseI GCWGC 2 cut(s) 101, 440
TspDTI ATGAA 1 cut(s) 103
Van91I CCANNNNNTGG 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.