Rw2G027780

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002304
Physical Location & Seq
Reverse (-)
43974807 .. 43978929
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027780.1

Sequence Viewer

Length: 681 bp
ATGGCTGATAGTATATTTGAAATGCATGTTTATAAGTTAAACCTTTTGTTGAATCCTTGGCTAGTAGAACTTGATTATGTGAGTCGGCTATTTTTGAGATCACATTCTACTTTATTAACTACTATAGTAATTACTACAAGTACGTCGGCAGGCTTAGATCAGATTTTACCATGGATGTTTTATCACAAGGTTATTGGAGTTTCCACCTTTTTTCTTTTTGTGGAAGGAAAGGCTGCGTCTCCTGAAGTATCCAAAGTTCTGGAGTCTATAACTGGAGTAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGTCAGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGTTTGTGGCTGTGAATTAGACGATGTAAAAGAGTTTCTTGTATCTTTTTGGCATTTAACATTCGGATTGGAAGCTAGGAGTGCTTCGAAATGCCTTCATCTTAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

226

Amino Acids

26.01

Weight (kDa)

5.35

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AasI GACNNNNNNGTC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 20, 52
AjnI CCWGG 1 cut(s) 535
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AluBI AGCT 5 cut(s) 304, 320, 385, 491, 644
AluI AGCT 5 cut(s) 304, 320, 385, 491, 644
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 243, 335
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 2 cut(s) 233, 523
AsuII TTCGAA 2 cut(s) 563, 656
AvaI CYCGRG 1 cut(s) 305
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 220, 510
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 537
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 243, 335
BfaI CTAG 3 cut(s) 62, 321, 645
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 2 cut(s) 234, 524
BlsI GCNGC 2 cut(s) 235, 525
Bme1390I CCNGG 1 cut(s) 537
BmeT110I CYCGRG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 427
BpmI CTGGAG 2 cut(s) 281, 294
Bpu14I TTCGAA 2 cut(s) 563, 656
BsaJI CCNNGG 4 cut(s) 56, 170, 498, 536
Bse1I ACTGG 2 cut(s) 277, 455
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 4 cut(s) 56, 170, 498, 536
BseGI GGATG 2 cut(s) 180, 442
BseNI ACTGG 2 cut(s) 277, 455
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 220, 510
BseYI CCCAGC 1 cut(s) 487
BshFI GGCC 1 cut(s) 676
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 305
BsmAI GTCTC 2 cut(s) 243, 335
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 676
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 2 cut(s) 563, 656
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 2 cut(s) 98, 157
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 496
BspT104I TTCGAA 2 cut(s) 563, 656
BspT107I GGYRCC 1 cut(s) 494
BsrI ACTGG 2 cut(s) 277, 455
BssECI CCNNGG 4 cut(s) 56, 170, 498, 536
BssMI GATC 2 cut(s) 98, 157
BssT1I CCWWGG 3 cut(s) 56, 170, 498
Bst2UI CCWGG 1 cut(s) 537
BstAPI GCANNNNNTGC 2 cut(s) 437, 523
BstBI TTCGAA 2 cut(s) 563, 656
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 154, 671
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 180, 442
BstKTI GATC 2 cut(s) 101, 160
BstMAI GTCTC 2 cut(s) 243, 335
BstMBI GATC 2 cut(s) 98, 157
BstMWI GCNNNNNNNGC 5 cut(s) 310, 437, 523, 532, 650
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 220, 510
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 676
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 180, 442
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 523
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 26, 171, 345, 372
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 154, 671
DpnI GATC 2 cut(s) 100, 159
DpnII GATC 2 cut(s) 98, 157
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 3 cut(s) 56, 170, 498
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 3 cut(s) 56, 170, 498
EcoT22I ATGCAT 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 3 cut(s) 56, 170, 498
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 4 cut(s) 29, 174, 348, 375
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FatI CATG 4 cut(s) 25, 170, 344, 371
Fnu4HI GCNGC 2 cut(s) 234, 524
FokI GGATG 2 cut(s) 187, 449
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 234, 524
FspBI CTAG 3 cut(s) 62, 321, 645
GluI GCNGC 2 cut(s) 234, 524
GsaI CCCAGC 1 cut(s) 491
GsuI CTGGAG 2 cut(s) 281, 294
HaeIII GGCC 1 cut(s) 676
HgaI GACGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 29, 174, 348, 375
HinfI GANTC 3 cut(s) 52, 82, 263
Hpy188I TCNGA 3 cut(s) 162, 330, 635
Hpy188III TCNNGA 3 cut(s) 242, 260, 464
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 218, 674
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 25, 375
HpyF10VI GCNNNNNNNGC 5 cut(s) 310, 437, 523, 532, 650
HpyF3I CTNAG 2 cut(s) 154, 671
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 4 cut(s) 29, 174, 348, 375
Kzo9I GATC 2 cut(s) 98, 157
LmnI GCTCC 2 cut(s) 301, 310
Lsp1109I GCAGC 2 cut(s) 220, 510
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 62, 321, 645
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 477
MalI GATC 2 cut(s) 100, 159
MboI GATC 2 cut(s) 98, 157
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 4 cut(s) 129, 281, 376, 584
MlyI GAGTC 2 cut(s) 91, 272
MnlI CCTC 2 cut(s) 301, 507
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 3 cut(s) 38, 116, 626
MspA1I CMGCKG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 5 cut(s) 310, 437, 523, 532, 650
NcoI CCATGG 1 cut(s) 170
NdeII GATC 2 cut(s) 98, 157
NlaIII CATG 4 cut(s) 29, 174, 348, 375
NlaIV GGNNCC 1 cut(s) 496
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 1 cut(s) 29
NspV TTCGAA 2 cut(s) 563, 656
PaeR7I CTCGAG 1 cut(s) 305
PceI AGGCCT 1 cut(s) 676
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 235, 525
PleI GAGTC 2 cut(s) 90, 271
PpsI GAGTC 2 cut(s) 90, 271
PsiI TTATAA 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 496
PspXI VCTCGAGB 1 cut(s) 305
PsrI GAACNNNNNNTAC 2 cut(s) 240, 272
PstNI CAGNNNCTG 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 38, 116, 626
SatI GCNGC 2 cut(s) 234, 524
Sau3AI GATC 2 cut(s) 98, 157
SchI GAGTC 2 cut(s) 91, 272
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 306
SetI ASST 9 cut(s) 45, 146, 192, 209, 306, 322, 387, 493, 646
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 305
SfuI TTCGAA 2 cut(s) 563, 656
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 4 cut(s) 129, 281, 376, 584
SseBI AGGCCT 1 cut(s) 676
SspMI CTAG 3 cut(s) 62, 321, 645
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 1 cut(s) 535
StyI CCWWGG 3 cut(s) 56, 170, 498
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 306, 563, 656
TasI AATT 4 cut(s) 129, 281, 376, 584
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 38, 116, 626
Tru9I TTAA 3 cut(s) 38, 116, 626
TseI GCWGC 2 cut(s) 233, 523
TspDTI ATGAA 2 cut(s) 449, 656
XceI RCATGY 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 305
XspI CTAG 3 cut(s) 62, 321, 645
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.