Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

4707078 .. 4712855

Gene Structure 5778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTTTGCTTCTTACTGGCATTGGTGATAAGGTTATGCGCCTTTGGTCATTGGAAAGCTATAAATGTGTGGGAGAATATCCCATTCCAGACAAAGTCCCTTTAGTTGACTTTGATTTTGATGAGAGCAAGATTGTTGGTTTGGTCGGCAGTCGTATATGCATATGGAGGCGGAACGGGATAAGAAGTATATTCCCCTCGCGTGAGGGCACCTTTCCAAAGGGCTTATGCATGCGTTACTGCGATCCTGATGCTGTGGTTGGCTGTGTGGATGGGACAGCTCGTGTATTTGACATGTACAGTCAACGATGTTCTCAAATCGTTAAAATGCATGCTGGTCCAGTGACATGCTTATGTTTGAGTGATGATCAGTTGATACTTAGCGGTTCTTCTCTTGGTAGTATCACGGTGTCCGGACTTTTATCTGATCAGCTGGTTGCAGAATTAAGATCGACACATTCCAAAGACATACGGACTTTGTGTTACAACCCCTCATCTCACCGGCTGTTCGCTGGATCAACTGATGGATATGTATTTTGTTGGGACCTTAGGACAAGGAGATGTTTATGGGAGACACGAGTGAGTCCAAATGTGGTATATTCAATGCAACACCTGAGAAATGATGCATCAAGCTTGGTGGTTGGTGGAATAGATGGTGTGCTACGTATACTGAATCAGAACACAGGTGAAGTAGTTTCAAGGTTTGTTTTGGAAGGCAACTTATTGTCAAGTTCAAGTTCAAGTTCTCATCAAAACGTAGTTGGAAGTGGCACCGTCCAAAGAATGACAGGACGAAGGCTTTCACAAAATGCCTCAATTGATAGCATTCCTAGAAGCAGTCGACCTCCCATCACTTGCTTAGCGGTCGGGATGAAGAAGGTTATCACCACACACAATAATAAGTACATCAGAACGCGGAAGTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

309

Amino Acids

34.15

Weight (kDa)

9.2

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_HPS5	PF23756	73 - 196	1.2e-06	HPS5 beta-propeller
Beta-prop_EML_2	PF23414	75 - 176	2.9e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_ACSF4	PF13570	76 - 254	2.2e-13	Beta-alanine-activating enzyme, beta-propeller
WD40_WDHD1_1st	PF24817	76 - 201	6.9e-11	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	85 - 223	5e-18	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	85 - 235	8.3e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	86 - 254	2.2e-14	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	89 - 241	2.9e-16	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	114 - 226	1.4e-06	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	124 - 239	1.3e-09	THOC3 beta-propeller domain
WDR55	PF24796	124 - 304	1.5e-09	WDR55
Beta-prop_EML_2	PF23414	159 - 244	2.5e-08	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	209, 770
AccI	GTMKAC	2 cut(s)	667, 841
AccII	CGCG	2 cut(s)	202, 916
AccIII	TCCGGA	1 cut(s)	413
AciI	CCGC	4 cut(s)	172, 384, 863, 916
AclWI	GGATC	2 cut(s)	239, 523
AfaI	GTAC	2 cut(s)	299, 905
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	603, 699, 735, 741, 925
AluBI	AGCT	4 cut(s)	60, 281, 433, 633
AluI	AGCT	4 cut(s)	60, 281, 433, 633
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	239, 523
Aor13HI	TCCGGA	1 cut(s)	413
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
Asp700I	GAANNNNTTC	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	338, 544
AsuHPI	GGTGA	4 cut(s)	38, 491, 698, 877
AvaII	GGWCC	2 cut(s)	338, 544
AxyI	CCTNAGG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	209, 770
BauI	CACGAG	2 cut(s)	282, 576
BccI	CCATC	4 cut(s)	266, 518, 647, 857
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BclI	TGATCA	2 cut(s)	367, 427
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	831
BlpI	GCTNAGC	1 cut(s)	859
Bme18I	GGWCC	2 cut(s)	338, 544
BmgT120I	GGNCC	2 cut(s)	338, 544
BmiI	GGNNCC	3 cut(s)	211, 545, 772
BmsI	GCATC	3 cut(s)	241, 613, 635
Bpu1102I	GCTNAGC	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	665
BsaWI	WCCGGW	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	22, 341
Bse21I	CCTNAGG	1 cut(s)	548
BseAI	TCCGGA	1 cut(s)	413
BseGI	GGATG	2 cut(s)	277, 876
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	2 cut(s)	22, 341
BseSI	GKGCMC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	202, 916
Bsh1285I	CGRYCG	1 cut(s)	867
BshNI	GGYRCC	2 cut(s)	209, 770
BsiEI	CGRYCG	1 cut(s)	867
BsiSI	CCGG	2 cut(s)	414, 502
BslFI	GGGAC	3 cut(s)	83, 289, 557
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	3 cut(s)	83, 289, 557
BsmI	GAATGC	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp13I	TCCGGA	1 cut(s)	413
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	244, 367, 427, 449, 515
Bsp1720I	GCTNAGC	1 cut(s)	859
BspACI	CCGC	4 cut(s)	172, 384, 863, 916
BspCNI	CTCAG	1 cut(s)	606
BspEI	TCCGGA	1 cut(s)	413
BspFNI	CGCG	2 cut(s)	202, 916
BspLI	GGNNCC	3 cut(s)	211, 545, 772
BspPI	GGATC	2 cut(s)	239, 523
BspT107I	GGYRCC	2 cut(s)	209, 770
BsrFI	RCCGGY	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	22, 341
BssAI	RCCGGY	1 cut(s)	501
BssMI	GATC	5 cut(s)	244, 367, 427, 449, 515
BssNAI	GTATAC	1 cut(s)	668
BssSI	CACGAG	2 cut(s)	282, 576
Bst1107I	GTATAC	1 cut(s)	668
Bst2BI	CACGAG	2 cut(s)	282, 576
Bst4CI	ACNGT	3 cut(s)	302, 409, 775
BstAUI	TGTACA	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	233, 333
BstDEI	CTNAG	4 cut(s)	380, 548, 614, 859
BstF5I	GGATG	2 cut(s)	277, 876
BstFNI	CGCG	2 cut(s)	202, 916
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	5 cut(s)	247, 370, 430, 452, 518
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	5 cut(s)	244, 367, 427, 449, 515
BstMCI	CGRYCG	1 cut(s)	867
BstNSI	RCATGY	4 cut(s)	235, 298, 335, 351
BstSLI	GKGCMC	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	665
BstUI	CGCG	2 cut(s)	202, 916
BstZ17I	GTATAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	277, 876
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	233, 333
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	338, 544
Csp6I	GTAC	2 cut(s)	298, 904
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	232, 295, 332, 348
CviJI	RGCY	8 cut(s)	60, 225, 264, 281, 433, 505, 633, 799
CviKI_1	RGCY	8 cut(s)	60, 225, 264, 281, 433, 505, 633, 799
CviQI	GTAC	2 cut(s)	298, 904
DdeI	CTNAG	4 cut(s)	380, 548, 614, 859
DpnI	GATC	5 cut(s)	246, 369, 429, 451, 517
DpnII	GATC	5 cut(s)	244, 367, 427, 449, 515
EciI	GGCGGA	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	338, 544
Eco81I	CCTNAGG	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	544
EcoT22I	ATGCAT	4 cut(s)	164, 233, 333, 628
FaeI	CATG	4 cut(s)	235, 298, 335, 351
FaqI	GGGAC	3 cut(s)	83, 289, 557
FatI	CATG	4 cut(s)	231, 294, 331, 347
FauNDI	CATATG	1 cut(s)	164
FbaI	TGATCA	2 cut(s)	367, 427
FblI	GTMKAC	2 cut(s)	667, 841
FokI	GGATG	2 cut(s)	284, 883
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	1 cut(s)	41
HapII	CCGG	2 cut(s)	414, 502
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	235, 298, 335, 351
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	3 cut(s)	109, 305, 842
HindII	GTYRAC	3 cut(s)	109, 305, 842
HindIII	AAGCTT	1 cut(s)	631
HinfI	GANTC	2 cut(s)	583, 673
HpaII	CCGG	2 cut(s)	414, 502
HphI	GGTGA	4 cut(s)	38, 491, 698, 877
Hpy166II	GTNNAC	4 cut(s)	109, 305, 668, 842
Hpy188I	TCNGA	3 cut(s)	427, 678, 911
Hpy188III	TCNNGA	4 cut(s)	89, 248, 414, 868
Hpy8I	GTNNAC	4 cut(s)	109, 305, 668, 842
HpyAV	CCTTC	3 cut(s)	707, 789, 871
HpyCH4III	ACNGT	3 cut(s)	302, 409, 775
HpyCH4IV	ACGT	2 cut(s)	664, 756
HpyCH4V	TGCA	6 cut(s)	162, 231, 331, 440, 607, 626
HpyF3I	CTNAG	4 cut(s)	380, 548, 614, 859
HpySE526I	ACGT	2 cut(s)	664, 756
Hsp92II	CATG	4 cut(s)	235, 298, 335, 351
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	413
Ksp22I	TGATCA	2 cut(s)	367, 427
Kzo9I	GATC	5 cut(s)	244, 367, 427, 449, 515
LweI	GCATC	3 cut(s)	241, 613, 635
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	2 cut(s)	664, 756
MaeIII	GTNAC	3 cut(s)	236, 343, 482
MalI	GATC	5 cut(s)	246, 369, 429, 451, 517
MboI	GATC	5 cut(s)	244, 367, 427, 449, 515
MboII	GAAGA	2 cut(s)	381, 886
MfeI	CAATTG	1 cut(s)	816
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	443, 816
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	6 cut(s)	162, 199, 208, 502, 823, 855
Mph1103I	ATGCAT	4 cut(s)	164, 233, 333, 628
MroI	TCCGGA	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	799
MseI	TTAA	2 cut(s)	324, 446
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	414, 502
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	1 cut(s)	825
MvnI	CGCG	2 cut(s)	202, 916
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	5 cut(s)	244, 367, 427, 449, 515
NlaIII	CATG	4 cut(s)	235, 298, 335, 351
NlaIV	GGNNCC	3 cut(s)	211, 545, 772
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	4 cut(s)	164, 233, 333, 628
NspI	RCATGY	4 cut(s)	235, 298, 335, 351
PaeI	GCATGC	2 cut(s)	235, 335
PciI	ACATGT	1 cut(s)	294
PctI	GAATGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	799
PfeI	GAWTC	1 cut(s)	673
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Ppu21I	YACGTR	1 cut(s)	665
PpuMI	RGGWCCY	1 cut(s)	544
PscI	ACATGT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	211, 545, 772
PspPI	GGNCC	2 cut(s)	338, 544
PspPPI	RGGWCCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	299, 905
RsaNI	GTAC	2 cut(s)	298, 904
RseI	CAYNNNNRTG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	840
SaqAI	TTAA	2 cut(s)	324, 446
Sau3AI	GATC	5 cut(s)	244, 367, 427, 449, 515
Sau96I	GGNCC	2 cut(s)	338, 544
SchI	GAGTC	1 cut(s)	592
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	3 cut(s)	241, 613, 635
SinI	GGWCC	2 cut(s)	338, 544
SmiMI	CAYNNNNRTG	1 cut(s)	352
SnaBI	TACGTA	1 cut(s)	665
SphI	GCATGC	2 cut(s)	235, 335
Sse9I	AATT	2 cut(s)	443, 816
SsiI	CCGC	4 cut(s)	172, 384, 863, 916
SspMI	CTAG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	302, 409, 775
TaiI	ACGT	2 cut(s)	667, 759
TaqI	TCGA	2 cut(s)	452, 841
TasI	AATT	2 cut(s)	443, 816
TatI	WGTACW	2 cut(s)	297, 903
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	2 cut(s)	324, 446
Tru9I	TTAA	2 cut(s)	324, 446
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	887
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	338, 544
XceI	RCATGY	4 cut(s)	235, 298, 335, 351
XmiI	GTMKAC	2 cut(s)	667, 841
XmnI	GAANNNNTTC	1 cut(s)	799
XspI	CTAG	1 cut(s)	831
Zsp2I	ATGCAT	4 cut(s)	164, 233, 333, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.