Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

43833142 .. 43833927

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGATGGTCTAGTGTACAATGCAGCTCTGTCGATAAGCGGGCTGAGATTCCACAGGGTTATGATGTGCTTAAGATGAGATTTCTATTTTGCAAGGGAATCCAACATGCTGTTGGAACACGTGGAAATGTCTATGAAGGATTTGAAATCGTTCAAACTGAAAAGTTCATCACCATCCATCCTTCTGAGTTATGTAACGAGGATATCAATACTATTAAGCAATCTCATTCCATACGTAAGATCGAGGACTTTATTAACACTGAGCTTCCTCCATTACAAAGAGAGAGAAAGCGGTCTCCTATTGTGGATCAGGCAATTGAATTTGTTCAGAACTCTATCGGCTCTCCTCTACCTCCTAATTATTTTATTGATGTGCATTTATCTGAAGGGTTTATGATTGTGCAGGAAACTAGTGATAAGCTGGGAGAAGATAGACTTAGCTCTTTGCATGAATCTGTTTTAATTTTGAGACTTGAAGTGGCTGTTCAGCCAAACAATTCATCTTCTGGGCTTCTGGTTGCTAGGGTGTCCGCTGTACAGCTGCGCATCAGTGCTTCTGCCGGTTATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

191

Amino Acids

21.27

Weight (kDa)

5.74

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
AciI	CCGC	3 cut(s)	40, 292, 531
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	18, 537
AflII	CTTAAG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	146, 155, 320, 476
AhlI	ACTAGT	1 cut(s)	410
AluBI	AGCT	5 cut(s)	27, 265, 421, 441, 541
AluI	AGCT	5 cut(s)	27, 265, 421, 441, 541
Alw26I	GTCTC	2 cut(s)	300, 463
AlwI	GGATC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	24, 541
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	2 cut(s)	150, 324
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	36, 528
BccI	CCATC	2 cut(s)	182, 186
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BcoDI	GTCTC	2 cut(s)	300, 463
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	3 cut(s)	12, 411, 522
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	25, 542
BlsI	GCNGC	2 cut(s)	26, 543
BmsI	GCATC	1 cut(s)	555
BsaAI	YACGTR	2 cut(s)	122, 236
BsaI	GGTCTC	1 cut(s)	300
Bse118I	RCCGGY	1 cut(s)	560
BseGI	GGATG	3 cut(s)	11, 174, 178
BseMII	CTCAG	3 cut(s)	36, 177, 252
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	36, 528
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	561
BsmAI	GTCTC	2 cut(s)	300, 463
Bso31I	GGTCTC	1 cut(s)	300
Bsp1407I	TGTACA	2 cut(s)	16, 535
Bsp143I	GATC	2 cut(s)	240, 307
BspACI	CCGC	3 cut(s)	40, 292, 531
BspCNI	CTCAG	3 cut(s)	37, 178, 253
BspPI	GGATC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	560
BsrGI	TGTACA	2 cut(s)	16, 535
BssAI	RCCGGY	1 cut(s)	560
BssMI	GATC	2 cut(s)	240, 307
BstAFI	CTTAAG	1 cut(s)	71
BstAUI	TGTACA	2 cut(s)	16, 535
BstBAI	YACGTR	2 cut(s)	122, 236
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	45, 186, 261, 437
BstF5I	GGATG	3 cut(s)	11, 174, 178
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	2 cut(s)	243, 310
BstMAI	GTCTC	2 cut(s)	300, 463
BstMBI	GATC	2 cut(s)	240, 307
BstNSI	RCATGY	1 cut(s)	110
BstSNI	TACGTA	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	36, 528
BtsCI	GGATG	3 cut(s)	11, 174, 178
BtsIMutI	CAGTG	2 cut(s)	258, 556
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	546
Cfr10I	RCCGGY	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	17, 536
CviAII	CATG	2 cut(s)	107, 449
CviQI	GTAC	2 cut(s)	17, 536
DdeI	CTNAG	4 cut(s)	45, 186, 261, 437
DpnI	GATC	2 cut(s)	242, 309
DpnII	GATC	2 cut(s)	240, 307
Eco105I	TACGTA	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	2 cut(s)	110, 452
FaiI	YATR	9 cut(s)	63, 108, 135, 193, 233, 395, 450, 567, 571
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	2 cut(s)	106, 448
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	25, 542
FokI	GGATG	3 cut(s)	18, 161, 165
Fsp4HI	GCNGC	2 cut(s)	25, 542
FspBI	CTAG	3 cut(s)	12, 411, 522
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	2 cut(s)	25, 542
GsaI	CCCAGC	1 cut(s)	425
HapII	CCGG	1 cut(s)	561
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	2 cut(s)	110, 452
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	49, 99, 452
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	3 cut(s)	187, 330, 385
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	131, 192, 380
HpyCH4IV	ACGT	2 cut(s)	121, 235
HpyCH4V	TGCA	5 cut(s)	24, 93, 376, 403, 448
HpyF3I	CTNAG	4 cut(s)	45, 186, 261, 437
HpySE526I	ACGT	2 cut(s)	121, 235
Hsp92II	CATG	2 cut(s)	110, 452
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	240, 307
LpnPI	CCDG	6 cut(s)	41, 296, 389, 407, 492, 500
Lsp1109I	GCAGC	2 cut(s)	36, 528
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	3 cut(s)	12, 411, 522
MaeII	ACGT	2 cut(s)	121, 235
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	242, 309
MboI	GATC	2 cut(s)	240, 307
MboII	GAAGA	2 cut(s)	440, 495
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	5 cut(s)	315, 320, 358, 462, 496
MmeI	TCCRAC	2 cut(s)	94, 127
MnlI	CCTC	5 cut(s)	193, 238, 279, 357, 363
MroXI	GAANNNNTTC	2 cut(s)	150, 324
MseI	TTAA	4 cut(s)	72, 216, 255, 461
MspA1I	CMGCKG	2 cut(s)	533, 541
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	315
NdeII	GATC	2 cut(s)	240, 307
NlaIII	CATG	2 cut(s)	110, 452
NsbI	TGCGCA	1 cut(s)	545
NspI	RCATGY	1 cut(s)	110
PdmI	GAANNNNTTC	2 cut(s)	150, 324
PfeI	GAWTC	3 cut(s)	49, 99, 452
PkrI	GCNGC	2 cut(s)	26, 543
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
Ppu21I	YACGTR	2 cut(s)	122, 236
PspCI	CACGTG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	18, 537
RsaNI	GTAC	2 cut(s)	17, 536
SaqAI	TTAA	4 cut(s)	72, 216, 255, 461
SatI	GCNGC	2 cut(s)	25, 542
Sau3AI	GATC	2 cut(s)	240, 307
SetI	ASST	8 cut(s)	29, 124, 238, 267, 355, 423, 443, 543
SfaNI	GCATC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SnaBI	TACGTA	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	5 cut(s)	315, 320, 358, 462, 496
SsiI	CCGC	3 cut(s)	40, 292, 531
SspMI	CTAG	3 cut(s)	12, 411, 522
TaiI	ACGT	2 cut(s)	124, 238
TaqI	TCGA	2 cut(s)	33, 243
TasI	AATT	5 cut(s)	315, 320, 358, 462, 496
TatI	WGTACW	2 cut(s)	16, 535
TfiI	GAWTC	3 cut(s)	49, 99, 452
Tru1I	TTAA	4 cut(s)	72, 216, 255, 461
Tru9I	TTAA	4 cut(s)	72, 216, 255, 461
TscAI	CASTG	2 cut(s)	265, 556
TseI	GCWGC	2 cut(s)	24, 541
TspDTI	ATGAA	4 cut(s)	150, 157, 465, 489
TspRI	CASTG	2 cut(s)	265, 556
Vha464I	CTTAAG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	2 cut(s)	150, 324
XspI	CTAG	3 cut(s)	12, 411, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.