Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

3021250 .. 3022117

Gene Structure 868 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATGATGCGCTTGAGATCAAATTTTCAGTGTACAAGGAAACCAAACACACTTTTACACCAGAGAGATACACTCAAGAAATTTGGACGATCCCCTACACAACAAAGGTCATTTCAGTCCGTCCTTCCGAGTTCTACAACCTCGATTCTACTAGTATTATGCAATCAAGCTTCTTCAGGGCTTATGATCGTAAACTTTATTAATACTCATTTTCCTCCTGAAGACAAAATACATCTCCCCAAAATTGTGGCAACAATAATTGATCTTGTTCAAAAATTCATTCCCTTGGTTCCTAATGGTTTCATTCATGTGCAACGAATTGAAGGGGTTGAAATTGTGCATCATGTTGATGATGAAGTGACTAAAGCGAAAATACATAATCATTTTGAAGCTACGAAACGGGGGACGTGTGCTATTTGTTTGGATGACTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCACGTTTTTCATGGACCTTGCATTCAATGCATTGTTGAGTGGCTGGATATCGATCATCATTGTCCCCTTTGCCGATATCCTCTGGCCCCTGAACTAGTACCATGGTTTAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

194

Amino Acids

22.15

Weight (kDa)

8.41

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	136 - 181	4.2e-11	Ring finger domain
zf-RING_11	PF17123	137 - 164	1.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	137 - 180	5.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	137 - 180	8.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	3 cut(s)	22, 80, 275
AcuI	CTGAAG	2 cut(s)	159, 240
AfaI	GTAC	2 cut(s)	34, 567
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	5 cut(s)	272, 323, 332, 389, 494
AhlI	ACTAGT	3 cut(s)	151, 449, 562
AjiI	CACGTC	1 cut(s)	408
AluBI	AGCT	2 cut(s)	170, 392
AluI	AGCT	2 cut(s)	170, 392
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	3 cut(s)	22, 80, 275
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	482, 553
AvaII	GGWCC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbsI	GAAGAC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BcuI	ACTAGT	3 cut(s)	151, 449, 562
BfaI	CTAG	3 cut(s)	152, 450, 563
Bme18I	GGWCC	1 cut(s)	482
BmgBI	CACGTC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	482, 553
BmiI	GGNNCC	2 cut(s)	291, 555
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BpuEI	CTTGAG	2 cut(s)	34, 59
Bsa29I	ATCGAT	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	285, 569
Bse8I	GATNNNNATC	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	285, 569
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	519
BshFI	GGCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	418, 516
BsmFI	GGGAC	2 cut(s)	418, 516
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	17, 89, 186, 262, 520
Bsp19I	CCATGG	1 cut(s)	569
BspANI	GGCC	1 cut(s)	554
BspDI	ATCGAT	1 cut(s)	519
BspLI	GGNNCC	2 cut(s)	291, 555
BspPI	GGATC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	285, 569
BssMI	GATC	5 cut(s)	17, 89, 186, 262, 520
BssT1I	CCWWGG	2 cut(s)	285, 569
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstAUI	TGTACA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	20, 92, 189, 265, 523
BstMBI	GATC	5 cut(s)	17, 89, 186, 262, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	466, 495
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	554
BsuTUI	ATCGAT	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	569
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	482, 553
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	2 cut(s)	33, 566
CviAII	CATG	4 cut(s)	308, 344, 479, 570
CviJI	RGCY	5 cut(s)	170, 181, 392, 511, 554
CviKI_1	RGCY	5 cut(s)	170, 181, 392, 511, 554
CviQI	GTAC	2 cut(s)	33, 566
DpnI	GATC	5 cut(s)	19, 91, 188, 264, 522
DpnII	GATC	5 cut(s)	17, 89, 186, 262, 520
Eco130I	CCWWGG	2 cut(s)	285, 569
Eco32I	GATATC	2 cut(s)	517, 545
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	159, 240
EcoRV	GATATC	2 cut(s)	517, 545
EcoT14I	CCWWGG	2 cut(s)	285, 569
EcoT22I	ATGCAT	1 cut(s)	500
ErhI	CCWWGG	2 cut(s)	285, 569
FaeI	CATG	4 cut(s)	311, 347, 482, 573
FaiI	YATR	8 cut(s)	160, 185, 309, 345, 378, 480, 571, 583
FaqI	GGGAC	2 cut(s)	418, 516
FatI	CATG	4 cut(s)	307, 343, 478, 569
FokI	GGATG	1 cut(s)	437
FspBI	CTAG	3 cut(s)	152, 450, 563
GlaI	GCGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	554
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	311, 347, 482, 573
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	33, 193
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	76, 218
Hpy8I	GTNNAC	2 cut(s)	33, 193
HpyAV	CCTTC	2 cut(s)	134, 317
HpyCH4IV	ACGT	3 cut(s)	407, 442, 471
HpyCH4V	TGCA	7 cut(s)	162, 313, 340, 469, 489, 498, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	466, 495
HpySE526I	ACGT	3 cut(s)	407, 442, 471
Hsp92II	CATG	4 cut(s)	311, 347, 482, 573
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	17, 89, 186, 262, 520
LpnPI	CCDG	6 cut(s)	74, 162, 231, 497, 536, 570
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	3 cut(s)	152, 450, 563
MaeII	ACGT	3 cut(s)	407, 442, 471
MaeIII	GTNAC	2 cut(s)	358, 443
MalI	GATC	5 cut(s)	19, 91, 188, 264, 522
MboI	GATC	5 cut(s)	17, 89, 186, 262, 520
MboII	GAAGA	2 cut(s)	165, 233
MluCI	AATT	7 cut(s)	22, 80, 243, 258, 275, 318, 333
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	151, 225, 427, 558
Mph1103I	ATGCAT	1 cut(s)	500
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	308, 348
Mva1269I	GAATGC	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	466, 495
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	5 cut(s)	17, 89, 186, 262, 520
NlaIII	CATG	4 cut(s)	311, 347, 482, 573
NlaIV	GGNNCC	2 cut(s)	291, 555
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	500
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	291, 555
PspPI	GGNCC	2 cut(s)	482, 553
RsaI	GTAC	2 cut(s)	34, 567
RsaNI	GTAC	2 cut(s)	33, 566
RseI	CAYNNNNRTG	2 cut(s)	308, 348
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	5 cut(s)	17, 89, 186, 262, 520
Sau96I	GGNCC	2 cut(s)	482, 553
SetI	ASST	9 cut(s)	110, 143, 172, 394, 410, 438, 445, 474, 487
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	308, 348
SmlI	CTYRAG	2 cut(s)	13, 74
SmoI	CTYRAG	2 cut(s)	13, 74
SpeI	ACTAGT	3 cut(s)	151, 449, 562
Sse9I	AATT	7 cut(s)	22, 80, 243, 258, 275, 318, 333
SspMI	CTAG	3 cut(s)	152, 450, 563
StyI	CCWWGG	2 cut(s)	285, 569
TaiI	ACGT	3 cut(s)	410, 445, 474
TaqI	TCGA	3 cut(s)	143, 454, 519
TasI	AATT	7 cut(s)	22, 80, 243, 258, 275, 318, 333
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	268, 292, 296, 369, 467
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	482
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	3 cut(s)	22, 80, 275
XspI	CTAG	3 cut(s)	152, 450, 563
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.