Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

28317647 .. 28318739

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACATTGCTCACCTTCAATGTTTTCAATCGATGCTCTGTGAGTTGGAACGGTCTACTATGGAGGTCTGTTGATACCTCGTCCCAGATCCCACTACGTGATGATGATGCGCTTAAGATCGAATTTATGTTCCTCAACGAAACCCAACACGCTTTTACACCAGATAGAGATACTCAAGATCAGATAAAAACAAAGAGAGATACTCAAGAAACTTGGGTGATCCCCCACACAACAACAACAAAGGCCATTACAGTCCGTCCTTCCGAGTTATACAACCACGATTCTACCAGTATTATGCAATCCTCTTCAGGGCGTATGATCGTAGACTTTATGAACGCCCATTTTCCTCCTCGAGACAAATTAGATCTCCCCAAAGTTGTGGCAGATATACTTTATCTTGTTCAAAACTCCATTCCCTTGGTTCCTAATGATTTCATTCATGTGCGACGATTTACAGGGATTGAAATAATGCATCATCTTGATGATGAAAACTCCCACAAGATGCCCAATGTTAACAAGGTTTGCTTCTCTTTTGCTGGCAAGGGGTTCTTTCCACAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

188

Amino Acids

21.63

Weight (kDa)

6.28

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	55, 324
AclWI	GGATC	2 cut(s)	82, 214
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	19, 28, 404, 464
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	82, 214
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	4, 229
AvaI	CYCGRG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	4 cut(s)	23, 97, 481, 492
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuEI	CTTGAG	2 cut(s)	159, 189
Bsa29I	ATCGAT	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	5
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
BspANI	GGCC	1 cut(s)	245
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	82, 214
BspTI	CTTAAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	53, 253
Bst6I	CTCTTC	1 cut(s)	310
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	6 cut(s)	90, 120, 181, 222, 321, 367
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
BstX2I	RGATCY	2 cut(s)	87, 364
BstXI	CCANNNNNNTGG	2 cut(s)	379, 418
BstYI	RGATCY	2 cut(s)	87, 364
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	538
CfoI	GCGC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	31
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	1 cut(s)	245
CviKI_1	RGCY	1 cut(s)	245
DpnI	GATC	6 cut(s)	89, 119, 180, 221, 320, 366
DpnII	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	61, 128, 271, 296, 317, 332, 389, 441
FalI	AAGNNNNNCTT	3 cut(s)	509, 541, 533
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	439
FblI	GTMKAC	2 cut(s)	55, 324
GlaI	GCGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	1 cut(s)	281
HpaI	GTTAAC	1 cut(s)	514
HphI	GGTGA	2 cut(s)	4, 229
Hpy166II	GTNNAC	3 cut(s)	56, 325, 514
Hpy188I	TCNGA	2 cut(s)	183, 265
Hpy188III	TCNNGA	4 cut(s)	176, 206, 353, 479
Hpy8I	GTNNAC	3 cut(s)	56, 325, 514
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	25, 270
HpyCH4III	ACNGT	2 cut(s)	53, 253
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	298, 472
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	110
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
LpnPI	CCDG	6 cut(s)	98, 174, 294, 301, 441, 522
LweI	GCATC	4 cut(s)	23, 97, 481, 492
MaeII	ACGT	1 cut(s)	97
MalI	GATC	6 cut(s)	89, 119, 180, 221, 320, 366
MboI	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
MboII	GAAGA	1 cut(s)	297
MflI	RGATCY	2 cut(s)	87, 364
MluCI	AATT	2 cut(s)	122, 359
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	6 cut(s)	57, 88, 143, 313, 357, 360
Mph1103I	ATGCAT	1 cut(s)	474
MseI	TTAA	2 cut(s)	114, 513
MslI	CAYNNNNRTG	2 cut(s)	440, 480
MspCI	CTTAAG	1 cut(s)	113
NdeII	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	423
PsuI	RGATCY	2 cut(s)	87, 364
RseI	CAYNNNNRTG	2 cut(s)	440, 480
SaqAI	TTAA	2 cut(s)	114, 513
Sau3AI	GATC	6 cut(s)	87, 117, 178, 219, 318, 364
SetI	ASST	5 cut(s)	17, 68, 80, 100, 522
SfaNI	GCATC	4 cut(s)	23, 97, 481, 492
Sfr274I	CTCGAG	1 cut(s)	351
SlaI	CTCGAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	2 cut(s)	440, 480
SmlI	CTYRAG	4 cut(s)	113, 174, 204, 351
SmoI	CTYRAG	4 cut(s)	113, 174, 204, 351
Sse9I	AATT	2 cut(s)	122, 359
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	53, 253
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	31, 120, 352
TasI	AATT	2 cut(s)	122, 359
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	114, 513
Tru9I	TTAA	2 cut(s)	114, 513
TspDTI	ATGAA	4 cut(s)	347, 424, 428, 501
TspGWI	ACGGA	1 cut(s)	245
Vha464I	CTTAAG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	351
XmiI	GTMKAC	2 cut(s)	55, 324
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.