Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

90870365 .. 90876827

Gene Structure 6463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAGTGAAGTTACAAAAGCGGATCTTGATGCTCTTCTTGCTTCTCTTACCGCGGCGTTTACCGCCGGCCTCAACACCATGAACAACTCCTTCATCTCGATCCGTCATTCAGAGTTATGTAATGTGGACACGGCTAAGCAATCTAATTCCATACGTATGATCGAGGACTTTATTAAAACCGAGTTTCCTAGAGAAAATCTGTCTTCTGTTTTGGATAAGGTAATTGAACTAGTTCAGAACTCAGTCGTCTCTCCTTTGCCTCCTGATCGTGTTATTGATGTGGAGCTTATAGACGGGGTTGTGGTTGTGCATCATACTGGTCTGGCAAGTGAAAAGACATTACGTGATAAAATGGAATCCACGCAATGCGGGACATGTCTTATATGCTTGGATGATGACCATGTTGTTAATCGTAACGCTAGTCGATTGCCTTGCTTGCATGCTTTTCATAAAAAATGCCTTGGCGAGTGGCTGAAAAGAAGTGATAATTGTCCCCTTTGCCGGTTTGTTATACCATCTGAATATGTTCCATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

179

Amino Acids

20.01

Weight (kDa)

5.47

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	125 - 168	1.2e-12	Ring finger domain
zf-C3HC4	PF00097	126 - 167	3.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	126 - 167	6.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	143 - 168	1.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	53
AciI	CCGC	5 cut(s)	20, 51, 53, 63, 369
AclWI	GGATC	2 cut(s)	30, 94
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	227
AhlI	ACTAGT	1 cut(s)	229
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	30, 94
AoxI	GGCC	1 cut(s)	67
Asp700I	GAANNNNTTC	2 cut(s)	231, 525
BbsI	GAAGAC	1 cut(s)	195
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	1 cut(s)	147
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BcoDI	GTCTC	1 cut(s)	253
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	3 cut(s)	189, 230, 420
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	19, 319
BpiI	GAAGAC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaAI	YACGTR	2 cut(s)	155, 344
BsaJI	CCNNGG	3 cut(s)	51, 460, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse118I	RCCGGY	2 cut(s)	65, 501
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	51, 460, 530
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	66, 502
BslFI	GGGAC	2 cut(s)	385, 477
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	2 cut(s)	385, 477
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	22, 99, 159, 265
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	5 cut(s)	20, 51, 53, 63, 369
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	53
BspPI	GGATC	2 cut(s)	30, 94
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	65, 501
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	2 cut(s)	65, 501
BssECI	CCNNGG	3 cut(s)	51, 460, 530
BssMI	GATC	4 cut(s)	22, 99, 159, 265
BssT1I	CCWWGG	2 cut(s)	460, 530
Bst6I	CTCTTC	1 cut(s)	39
BstBAI	YACGTR	2 cut(s)	155, 344
BstC8I	GCNNGC	3 cut(s)	67, 437, 441
BstDEI	CTNAG	2 cut(s)	135, 241
BstDSI	CCRYGG	2 cut(s)	51, 530
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	4 cut(s)	25, 102, 162, 268
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	4 cut(s)	22, 99, 159, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 62, 436
BstNSI	RCATGY	2 cut(s)	378, 443
BstSNI	TACGTA	1 cut(s)	155
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	2 cut(s)	51, 530
BtsCI	GGATG	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	67, 437, 441
Cfr10I	RCCGGY	2 cut(s)	65, 501
Cfr42I	CCGCGG	1 cut(s)	54
CviAII	CATG	5 cut(s)	79, 375, 401, 440, 531
CviJI	RGCY	4 cut(s)	69, 134, 286, 472
CviKI_1	RGCY	4 cut(s)	69, 134, 286, 472
DdeI	CTNAG	2 cut(s)	135, 241
DpnI	GATC	4 cut(s)	24, 101, 161, 267
DpnII	GATC	4 cut(s)	22, 99, 159, 265
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco105I	TACGTA	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	460, 530
EcoT14I	CCWWGG	2 cut(s)	460, 530
ErhI	CCWWGG	2 cut(s)	460, 530
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	5 cut(s)	82, 378, 404, 443, 534
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	2 cut(s)	385, 477
FatI	CATG	5 cut(s)	78, 374, 400, 439, 530
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	3 cut(s)	189, 230, 420
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	66, 502
Hin1II	CATG	5 cut(s)	82, 378, 404, 443, 534
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	66, 502
Hpy166II	GTNNAC	2 cut(s)	60, 127
Hpy188I	TCNGA	3 cut(s)	112, 237, 520
Hpy188III	TCNNGA	3 cut(s)	26, 97, 263
Hpy8I	GTNNAC	2 cut(s)	60, 127
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	154, 343
HpyCH4V	TGCA	2 cut(s)	310, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 62, 436
HpyF3I	CTNAG	2 cut(s)	135, 241
HpySE526I	ACGT	2 cut(s)	154, 343
Hsp92II	CATG	5 cut(s)	82, 378, 404, 443, 534
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	22, 99, 159, 265
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	79, 276, 303, 308, 515
LweI	GCATC	2 cut(s)	19, 319
MaeI	CTAG	3 cut(s)	189, 230, 420
MaeII	ACGT	2 cut(s)	154, 343
MaeIII	GTNAC	2 cut(s)	10, 413
MalI	GATC	4 cut(s)	24, 101, 161, 267
MboI	GATC	4 cut(s)	22, 99, 159, 265
MboII	GAAGA	2 cut(s)	26, 195
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	3 cut(s)	145, 222, 487
MnlI	CCTC	3 cut(s)	80, 157, 270
MroNI	GCCGGC	1 cut(s)	65
MroXI	GAANNNNTTC	2 cut(s)	231, 525
MseI	TTAA	3 cut(s)	174, 408, 538
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	66, 502
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	38, 62, 436
NaeI	GCCGGC	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	4 cut(s)	22, 99, 159, 265
NgoMIV	GCCGGC	1 cut(s)	65
NlaIII	CATG	5 cut(s)	82, 378, 404, 443, 534
NspI	RCATGY	2 cut(s)	378, 443
PaeI	GCATGC	1 cut(s)	443
PciI	ACATGT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	231, 525
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	55
Ppu21I	YACGTR	2 cut(s)	155, 344
PscI	ACATGT	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	155
SacII	CCGCGG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	174, 408, 538
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	22, 99, 159, 265
SetI	ASST	4 cut(s)	157, 222, 288, 346
SfaNI	GCATC	2 cut(s)	19, 319
Sfr303I	CCGCGG	1 cut(s)	54
SgrBI	CCGCGG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	155
SnaBI	TACGTA	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	229
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	145, 222, 487
SsiI	CCGC	5 cut(s)	20, 51, 53, 63, 369
SspMI	CTAG	3 cut(s)	189, 230, 420
StyI	CCWWGG	2 cut(s)	460, 530
TaiI	ACGT	2 cut(s)	157, 346
TaqI	TCGA	3 cut(s)	98, 162, 424
TasI	AATT	3 cut(s)	145, 222, 487
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	3 cut(s)	174, 408, 538
Tru9I	TTAA	3 cut(s)	174, 408, 538
TspDTI	ATGAA	3 cut(s)	82, 95, 437
TspGWI	ACGGA	1 cut(s)	92
XceI	RCATGY	2 cut(s)	378, 443
XmnI	GAANNNNTTC	2 cut(s)	231, 525
XspI	CTAG	3 cut(s)	189, 230, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.