Rh4AG021800
ERF Family

negative regulation of interferon-beta production

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
4098745 .. 4099129
385 bp
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UTR
Exon/CDS
Intron
Rh4AG021800.1

Sequence Viewer

Length: 385 bp
ATGATGCGCTTAAGATCCAATTTATGTTCTACAAGGAAACCAAACACACTTTTGCACCAGATGATACTCAAAAAATTAATTTGGATGATCCGCAACACAACAGAGGTCATTACAGTCCGTCCTTCCCAGTTATACAACCACGATTCTACTAGTATCATGCAATCTTCTTCAGGGCGTATGATCGTGGACTATATTAACACCCATTTTCCTCCTCAAGACAAAATACATCTCCCCAAAATTGTGGCAGCAATAATTGATCTTGCTCAAAACTCCATTCACTTGGTTACTAATGGTTTCATTGATTTGCGACGAATTGAAGGGATTGAAATTGAGCGTCATCCTCGTGATGAAGCGAGTAAAGCCTACATACATAATCGTTTTGAAG

Protein Analysis

128

Amino Acids

14.94

Weight (kDa)

9.72

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 91
AclWI GGATC 2 cut(s) 9, 82
AcuI CTGAAG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 3 cut(s) 317, 326, 383
AhlI ACTAGT 1 cut(s) 149
AlwI GGATC 2 cut(s) 9, 82
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 9
BauI CACGAG 1 cut(s) 342
BbvI GCAGC 1 cut(s) 257
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 10
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 90, 337
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 14, 87, 180, 256
BspACI CCGC 1 cut(s) 91
BspPI GGATC 2 cut(s) 9, 82
BspTI CTTAAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 127
BssMI GATC 4 cut(s) 14, 87, 180, 256
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 115
BstAFI CTTAAG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 90, 337
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 4 cut(s) 17, 90, 183, 259
BstMBI GATC 4 cut(s) 14, 87, 180, 256
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 2 cut(s) 241, 280
BstYI RGATCY 1 cut(s) 14
BtsCI GGATG 2 cut(s) 90, 337
CfoI GCGC 1 cut(s) 9
CseI GACGC 1 cut(s) 323
CviAII CATG 1 cut(s) 157
CviJI RGCY 1 cut(s) 362
CviKI_1 RGCY 1 cut(s) 362
DpnI GATC 4 cut(s) 16, 89, 182, 258
DpnII GATC 4 cut(s) 14, 87, 180, 256
Eco57I CTGAAG 1 cut(s) 153
FaeI CATG 1 cut(s) 160
FaiI YATR 7 cut(s) 25, 133, 158, 179, 192, 368, 372
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 97, 324
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 246
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 215, 344
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 132, 311
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 55, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 4 cut(s) 14, 87, 180, 256
LpnPI CCDG 3 cut(s) 71, 140, 156
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 283
MalI GATC 4 cut(s) 16, 89, 182, 258
MboI GATC 4 cut(s) 14, 87, 180, 256
MboII GAAGA 2 cut(s) 156, 159
MflI RGATCY 1 cut(s) 14
MluCI AATT 7 cut(s) 19, 74, 78, 237, 252, 312, 327
MnlI CCTC 4 cut(s) 97, 219, 222, 351
MseI TTAA 3 cut(s) 11, 77, 195
MslI CAYNNNNRTG 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 4 cut(s) 14, 87, 180, 256
NlaIII CATG 1 cut(s) 160
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 77
PsuI RGATCY 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 11, 77, 195
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 4 cut(s) 14, 87, 180, 256
SetI ASST 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 10, 213
SmoI CTYRAG 2 cut(s) 10, 213
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 7 cut(s) 19, 74, 78, 237, 252, 312, 327
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 115
TasI AATT 7 cut(s) 19, 74, 78, 237, 252, 312, 327
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 3 cut(s) 11, 77, 195
Tru9I TTAA 3 cut(s) 11, 77, 195
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 286, 363
TspGWI ACGGA 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 10
VspI ATTAAT 1 cut(s) 77
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.