Rh5AG306100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
43621677 .. 43631359
9683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG306100.1

Sequence Viewer

Length: 426 bp
ATGAATCGTGGAAAGAAGTGGCTGGACTTTACAATCACCGGAAAACAGCGTCGGCAAAATTTTTGGTCTGTTGATACCTCGTCCGATATTCCACCACGTGACGATGATGCGCTTAAGATCGAATTTGTGTTCCTCAATGAAACCCGACACGCTTTTACACCAGATAGATATACTCAAGATCAGATAAAAAACAGAGATACTCGAGAAACTTGGGTGATCCCCCACACAACAACAACAAAGGTCATTACAGTCCGTCCTTCCGAGTTATACAACCACGATTCTACTAGTATTATGCAATCCTCTTCAGGGCGTATTATAGTAGACTTTCTAAACACCCATTTTCCTCCTCGAGGCAAATTAGAACTCCACAAATGTTGTGGCAGAAATAATTTATTTTGTTCAAAACTCCATTCCCTTGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.44

Weight (kDa)

9.33

Isoelectric Point (pI)

20.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 348
AccI GTMKAC 1 cut(s) 321
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 2 cut(s) 58, 122
AcuI CTGAAG 1 cut(s) 288
AcvI CACGTG 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 306, 350
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 402
AhlI ACTAGT 1 cut(s) 284
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 2 cut(s) 201, 348
ApoI RAATTY 2 cut(s) 58, 122
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 28, 226
AvaI CYCGRG 2 cut(s) 201, 348
BbrPI CACGTG 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 113
BmeT110I CYCGRG 2 cut(s) 201, 348
BmiI GGNNCC 1 cut(s) 421
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 415
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 350
BseDI CCNNGG 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 306, 350
BseRI GAGGAG 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 201, 348
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 306, 350
BsoBI CYCGRG 2 cut(s) 201, 348
Bsp143I GATC 3 cut(s) 117, 178, 216
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 117, 178, 216
BssT1I CCWWGG 1 cut(s) 415
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 307
BstAFI CTTAAG 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 98
BstENI CCTNNNNNAGG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 120, 181, 219
BstMBI GATC 3 cut(s) 117, 178, 216
BstXI CCANNNNNNTGG 1 cut(s) 416
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 38
CspCI CAANNNNNGTGG 4 cut(s) 356, 358, 391, 393
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
DpnI GATC 3 cut(s) 119, 180, 218
DpnII GATC 3 cut(s) 117, 178, 216
DraIII CACNNNGTG 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 201, 348
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaiI YATR 4 cut(s) 171, 268, 293, 317
FblI GTMKAC 1 cut(s) 321
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 111
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 4, 278
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 28, 226
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 85, 183, 262
Hpy188III TCNNGA 2 cut(s) 176, 203
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 97
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 3 cut(s) 117, 178, 216
LpnPI CCDG 4 cut(s) 8, 52, 174, 291
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 119, 180, 218
MboI GATC 3 cut(s) 117, 178, 216
MboII GAAGA 1 cut(s) 294
MluCI AATT 4 cut(s) 58, 122, 356, 388
MnlI CCTC 6 cut(s) 88, 143, 310, 344, 354, 357
MseI TTAA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 1 cut(s) 39
NdeII GATC 3 cut(s) 117, 178, 216
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 98
PaeR7I CTCGAG 2 cut(s) 201, 348
PfeI GAWTC 2 cut(s) 4, 278
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 98
PspCI CACGTG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 421
PspXI VCTCGAGB 1 cut(s) 348
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 3 cut(s) 117, 178, 216
SetI ASST 3 cut(s) 80, 100, 243
SfaNI GCATC 1 cut(s) 97
Sfr274I CTCGAG 2 cut(s) 201, 348
SlaI CTCGAG 2 cut(s) 201, 348
SmlI CTYRAG 4 cut(s) 113, 174, 201, 348
SmoI CTYRAG 4 cut(s) 113, 174, 201, 348
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 4 cut(s) 58, 122, 356, 388
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 100
TaqI TCGA 3 cut(s) 120, 202, 349
TasI AATT 4 cut(s) 58, 122, 356, 388
TfiI GAWTC 2 cut(s) 4, 278
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 17, 153
TspGWI ACGGA 1 cut(s) 242
Vha464I CTTAAG 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 2 cut(s) 58, 122
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XhoI CTCGAG 2 cut(s) 201, 348
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.