Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

1748078 .. 1748659

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCACCGTCAAAATCAAAGTTCAGAGATGTTACCCTCTACTATTATCCGGCAACCGAAGTGGAATGGAAGACAGTACCATGCAGCTCTACCGATGAGCCAACGAATGCTGATGCGCTTAGGATCCAATTTGTATTCATCAAGAAAACCTACCATACTATTGGAACACTTGAAAATGTTCGGGAAGGACTTGATATCATCAAAGCTAAAAAGTTCATCTCGATCCGTCATTCAGAGTTATGTAATGTGGATACGGCCAAGCAATCTAATTCCATACGTATGATCGAGGACTTTATTAAAACCGAGTTTCCTAGAGAAAATCCGTCTTCTGTTTTGGATAAGGTAATTGAACTAGTTCAGAACTCAGTCGTCTCTCCTTTGCCTCCTGATCGTGTTATTGATGTGGAGCTTATAGACGGGGTTGTGGTTGTGCATCATACTGGTCTGGCAAGTGAAAAGACATTGCGTGATAAAATGGAATCCATGCAATGCGGGACATGTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.09

Weight (kDa)

5.82

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	3 cut(s)	118, 131, 217
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	173, 350
AhlI	ACTAGT	1 cut(s)	352
AluBI	AGCT	3 cut(s)	87, 206, 409
AluI	AGCT	3 cut(s)	87, 206, 409
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	3 cut(s)	118, 131, 217
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	84
Asp700I	GAANNNNTTC	2 cut(s)	177, 354
AspLEI	GCGC	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	77, 318
BbvI	GCAGC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	312, 353
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	6, 125
BmsI	GCATC	2 cut(s)	103, 442
BpiI	GAAGAC	2 cut(s)	77, 318
Bpu10I	CCTNAGC	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	461, 494
BseMI	GCAATG	2 cut(s)	461, 494
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	4 cut(s)	123, 222, 282, 388
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	6, 125
BspPI	GGATC	3 cut(s)	118, 131, 217
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	461, 494
BsrI	ACTGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	123, 222, 282, 388
Bst4CI	ACNGT	2 cut(s)	9, 76
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	119, 364
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	126, 225, 285, 391
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	4 cut(s)	123, 222, 282, 388
BstNSI	RCATGY	1 cut(s)	501
BstSNI	TACGTA	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	77, 318
BstX2I	RGATCY	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	257
CfoI	GCGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	3 cut(s)	81, 484, 498
CviJI	RGCY	5 cut(s)	87, 100, 206, 257, 409
CviKI_1	RGCY	5 cut(s)	87, 100, 206, 257, 409
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	119, 364
DpnI	GATC	4 cut(s)	125, 224, 284, 390
DpnII	GATC	4 cut(s)	123, 222, 282, 388
EaeI	YGGCCR	1 cut(s)	255
Eco105I	TACGTA	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	3 cut(s)	84, 487, 501
FatI	CATG	3 cut(s)	80, 483, 497
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	312, 353
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	84, 487, 501
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	3 cut(s)	26, 235, 360
Hpy188III	TCNNGA	4 cut(s)	142, 182, 220, 386
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	9, 76
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	84, 433, 487
HpyF3I	CTNAG	2 cut(s)	119, 364
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	3 cut(s)	84, 487, 501
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	123, 222, 282, 388
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	4 cut(s)	63, 399, 426, 431
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	2 cut(s)	103, 442
MaeI	CTAG	2 cut(s)	312, 353
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	125, 224, 284, 390
MboI	GATC	4 cut(s)	123, 222, 282, 388
MboII	GAAGA	2 cut(s)	82, 318
MflI	RGATCY	1 cut(s)	123
MluCI	AATT	3 cut(s)	128, 268, 345
MnlI	CCTC	3 cut(s)	47, 280, 393
MroXI	GAANNNNTTC	2 cut(s)	177, 354
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	123, 222, 282, 388
NlaIII	CATG	3 cut(s)	84, 487, 501
NlaIV	GGNNCC	2 cut(s)	6, 125
NspI	RCATGY	1 cut(s)	501
PciI	ACATGT	1 cut(s)	497
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	177, 354
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	6, 125
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	4 cut(s)	123, 222, 282, 388
SetI	ASST	6 cut(s)	89, 152, 208, 280, 345, 411
SfaNI	GCATC	2 cut(s)	103, 442
SmiMI	CAYNNNNRTG	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	3 cut(s)	128, 268, 345
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	312, 353
TaaI	ACNGT	2 cut(s)	9, 76
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	221, 285
TasI	AATT	3 cut(s)	128, 268, 345
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	127, 205
TspGWI	ACGGA	2 cut(s)	215, 312
XceI	RCATGY	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	177, 354
XspI	CTAG	2 cut(s)	312, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.