Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

1825695 .. 1826270

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTGCTTCTCGGCCCAGATTCCACCAACTGATGATGATGATGTGCTTAATATCGAATTCTTGTTTCACCGCGTCATCAGACACACTCTTACACCACATAGAGATACTCAAGAAATTTGGACGGTTTCCCAGTCAACAAAGGTCATTACAGTCCGTCCTTCCGAGTTAAACAAGGTCCATTCTACGATCATGCACTTTGTTGAAACCCATTTTCCTCCCGAAGACAAAGTGCAGCTCCCCGGAATTGTGGCAGCAATAGTTCATAGTATTCGAAACTCCATTCCCTCGGTTCCTAATGGTTACATTCAAGTGCAACGACTTCAAGGGACTGAAATTGTGCACCATGTTGATGATGAAGTGACTAAAGCGTACCTGCATAATCGTTTCGAAGCTACAAAACATGGGACGTGTGCTATTTGTTTGGATGACTTTGAGGTTGGACGTCACACCAGTCGATTGCCTTGCTTGCATGTTTTTCATGGACCGTGCATTGTGAAGTGGCTGAAGATTGATCTACATTGTCCCCTTTGCCGATATTCTGTGACCCCTGAACTAGCACCATGGTTTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

6.41

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	136 - 178	2.9e-14	Ring finger domain
zf-C3HC4_2	PF13923	137 - 177	9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	137 - 164	1.1e-08	RING-like zinc finger
zf-C3HC4	PF00097	137 - 177	5.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	137 - 175	8.1e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	381
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	56, 114
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	203, 308, 323
AjiI	CACGTC	1 cut(s)	408
AluBI	AGCT	2 cut(s)	235, 392
AluI	AGCT	2 cut(s)	235, 392
Alw21I	GWGCWC	1 cut(s)	342
Alw44I	GTGCAC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	232, 251
ApoI	RAATTY	2 cut(s)	56, 114
AspS9I	GGNCC	3 cut(s)	13, 175, 482
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	2 cut(s)	271, 387
AvaII	GGWCC	2 cut(s)	175, 482
BaeGI	GKGCMC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	244, 263
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	233, 252
BlsI	GCNGC	2 cut(s)	234, 253
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	175, 482
BmgBI	CACGTC	1 cut(s)	408
BmgT120I	GGNCC	3 cut(s)	13, 175, 482
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	228
Bpu14I	TTCGAA	2 cut(s)	271, 387
BpuEI	CTTGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	238, 285, 560
Bse1I	ACTGG	2 cut(s)	130, 450
BseDI	CCNNGG	3 cut(s)	238, 285, 560
BseGI	GGATG	1 cut(s)	430
BseNI	ACTGG	2 cut(s)	130, 450
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	244, 263
BsgI	GTGCAG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	3 cut(s)	340, 418, 507
BsmFI	GGGAC	3 cut(s)	340, 418, 507
BsnI	GGCC	1 cut(s)	14
Bsp119I	TTCGAA	2 cut(s)	271, 387
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	186, 511
Bsp19I	CCATGG	1 cut(s)	560
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	381
BspT104I	TTCGAA	2 cut(s)	271, 387
BsrI	ACTGG	2 cut(s)	130, 450
BssECI	CCNNGG	3 cut(s)	238, 285, 560
BssMI	GATC	2 cut(s)	186, 511
BssNI	GRCGYC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	124, 151, 486
BstACI	GRCGYC	1 cut(s)	442
BstBI	TTCGAA	2 cut(s)	271, 387
BstC8I	GCNNGC	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	189, 514
BstMBI	GATC	2 cut(s)	186, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	244, 263
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	560
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	13, 175, 482
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	6 cut(s)	190, 344, 401, 470, 479, 561
CviJI	RGCY	4 cut(s)	14, 235, 392, 502
CviKI_1	RGCY	4 cut(s)	14, 235, 392, 502
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	2 cut(s)	188, 513
DpnII	GATC	2 cut(s)	186, 511
Eco130I	CCWWGG	1 cut(s)	560
Eco47I	GGWCC	2 cut(s)	175, 482
Eco57I	CTGAAG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	6 cut(s)	193, 347, 404, 473, 482, 564
FaqI	GGGAC	3 cut(s)	340, 418, 507
FatI	CATG	6 cut(s)	189, 343, 400, 469, 478, 560
Fnu4HI	GCNGC	2 cut(s)	233, 252
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	233, 252
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	2 cut(s)	233, 252
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	6 cut(s)	193, 347, 404, 473, 482, 564
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	135, 340
Hpy188I	TCNGA	2 cut(s)	80, 163
Hpy188III	TCNNGA	2 cut(s)	110, 218
Hpy8I	GTNNAC	2 cut(s)	135, 340
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	3 cut(s)	124, 151, 486
HpyCH4IV	ACGT	2 cut(s)	407, 442
HpyCH4V	TGCA	8 cut(s)	193, 232, 313, 340, 376, 469, 489, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpySE526I	ACGT	2 cut(s)	407, 442
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	6 cut(s)	193, 347, 404, 473, 482, 564
Kzo9I	GATC	2 cut(s)	186, 511
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	6 cut(s)	29, 143, 253, 386, 463, 561
Lsp1109I	GCAGC	2 cut(s)	244, 263
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	2 cut(s)	407, 442
MaeIII	GTNAC	4 cut(s)	299, 358, 443, 541
MalI	GATC	2 cut(s)	188, 513
MboI	GATC	2 cut(s)	186, 511
MboII	GAAGA	2 cut(s)	233, 517
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	56, 114, 243, 333
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	3 cut(s)	225, 295, 427
Mph1103I	ATGCAT	1 cut(s)	574
MseI	TTAA	3 cut(s)	48, 167, 567
MslI	CAYNNNNRTG	2 cut(s)	308, 348
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	466
NciI	CCSGG	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	2 cut(s)	186, 511
NlaIII	CATG	6 cut(s)	193, 347, 404, 473, 482, 564
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	3 cut(s)	358, 443, 541
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	2 cut(s)	271, 387
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	234, 253
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	13, 175, 482
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	2 cut(s)	308, 348
SaqAI	TTAA	3 cut(s)	48, 167, 567
SatI	GCNGC	2 cut(s)	233, 252
Sau3AI	GATC	2 cut(s)	186, 511
Sau96I	GGNCC	3 cut(s)	13, 175, 482
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	8 cut(s)	144, 177, 237, 375, 394, 410, 438, 445
SfuI	TTCGAA	2 cut(s)	271, 387
SinI	GGWCC	2 cut(s)	175, 482
SmiMI	CAYNNNNRTG	2 cut(s)	308, 348
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	56, 114, 243, 333
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	3 cut(s)	124, 151, 486
TaiI	ACGT	2 cut(s)	410, 445
TaqI	TCGA	4 cut(s)	54, 271, 387, 454
TasI	AATT	4 cut(s)	56, 114, 243, 333
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	48, 167, 567
Tru9I	TTAA	3 cut(s)	48, 167, 567
TseFI	GTSAC	3 cut(s)	358, 443, 541
TseI	GCWGC	2 cut(s)	232, 251
Tsp45I	GTSAC	3 cut(s)	358, 443, 541
TspDTI	ATGAA	3 cut(s)	251, 369, 467
TspGWI	ACGGA	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	175, 482
XapI	RAATTY	2 cut(s)	56, 114
XceI	RCATGY	1 cut(s)	473
XspI	CTAG	1 cut(s)	554
ZraI	GACGTC	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.