Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

1298399 .. 1298980

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCACCGTCAAAATCAAAGTTCAGAGATGTTACCCTCTACTATTATCCGGCAGCCGAAGTGGAATGGAAGACAGTACCATGCAGCTCTACCGATGAGCCAACGAGTGCTGATGCGCTTAGGATCCGATTTGTATTAATCAAGAAAACCTACCATACTATTGGAACACTTGAAAATGTTCGGGAAGGACTTGATATCATCAAAGCTAAAAAGTTCATCTCGATCCGTCATTCAGAGTTATGTAATGTGGATACGGCTAAGCAATCTAATTCCATACGTATGATCGAGGACTTTATTAAAACCGAGTTTCCTAGAGAAAATCCGTCTTCTGTTTTGGATAAGGTAATTGAACTAGTTCAGAACTCAATCGTCTCTCCTTTGCCTCCTGATCGTGTTATTGATGTGGAGCTTATAGACGGGGTTGTGGTTGTGCATCATACTGATCTGGCAAGTGAAAAGACATTAGGTGATAAAATGGAATCCACGCAATGCGGGACATGTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.97

Weight (kDa)

5.6

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	3 cut(s)	118, 131, 217
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	173, 350
AhlI	ACTAGT	1 cut(s)	352
AluBI	AGCT	3 cut(s)	87, 206, 409
AluI	AGCT	3 cut(s)	87, 206, 409
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	3 cut(s)	118, 131, 217
ApeKI	GCWGC	2 cut(s)	53, 84
AseI	ATTAAT	1 cut(s)	137
Asp700I	GAANNNNTTC	2 cut(s)	177, 354
AspLEI	GCGC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	77, 318
BbvI	GCAGC	2 cut(s)	65, 96
BceAI	ACGGC	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	312, 353
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	54, 85
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	2 cut(s)	55, 86
BmiI	GGNNCC	2 cut(s)	6, 125
BmsI	GCATC	2 cut(s)	103, 442
BpiI	GAAGAC	2 cut(s)	77, 318
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	65, 96
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	123, 222, 282, 388, 442
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	6, 125
BspPI	GGATC	3 cut(s)	118, 131, 217
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	494
BssMI	GATC	5 cut(s)	123, 222, 282, 388, 442
Bst4CI	ACNGT	2 cut(s)	9, 76
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	119, 258
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	126, 225, 285, 391, 445
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	5 cut(s)	123, 222, 282, 388, 442
BstNSI	RCATGY	1 cut(s)	501
BstSNI	TACGTA	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	65, 96
BstV2I	GAAGAC	2 cut(s)	77, 318
BstX2I	RGATCY	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	2 cut(s)	81, 498
CviJI	RGCY	6 cut(s)	56, 87, 100, 206, 257, 409
CviKI_1	RGCY	6 cut(s)	56, 87, 100, 206, 257, 409
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	119, 258
DpnI	GATC	5 cut(s)	125, 224, 284, 390, 444
DpnII	GATC	5 cut(s)	123, 222, 282, 388, 442
Eco105I	TACGTA	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	2 cut(s)	84, 501
FatI	CATG	2 cut(s)	80, 497
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	2 cut(s)	54, 85
Fsp4HI	GCNGC	2 cut(s)	54, 85
FspBI	CTAG	2 cut(s)	312, 353
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	54, 85
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	84, 501
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	4 cut(s)	26, 128, 235, 360
Hpy188III	TCNNGA	4 cut(s)	142, 182, 220, 386
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	9, 76
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	84, 433
HpyF3I	CTNAG	2 cut(s)	119, 258
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	84, 501
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	5 cut(s)	123, 222, 282, 388, 442
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	3 cut(s)	63, 399, 431
Lsp1109I	GCAGC	2 cut(s)	65, 96
LweI	GCATC	2 cut(s)	103, 442
MaeI	CTAG	2 cut(s)	312, 353
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	5 cut(s)	125, 224, 284, 390, 444
MboI	GATC	5 cut(s)	123, 222, 282, 388, 442
MboII	GAAGA	2 cut(s)	82, 318
MflI	RGATCY	1 cut(s)	123
MluCI	AATT	2 cut(s)	268, 345
MnlI	CCTC	3 cut(s)	47, 280, 393
MroXI	GAANNNNTTC	2 cut(s)	177, 354
MseI	TTAA	2 cut(s)	137, 297
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	50
NdeII	GATC	5 cut(s)	123, 222, 282, 388, 442
NlaIII	CATG	2 cut(s)	84, 501
NlaIV	GGNNCC	2 cut(s)	6, 125
NspI	RCATGY	1 cut(s)	501
PciI	ACATGT	1 cut(s)	497
PdmI	GAANNNNTTC	2 cut(s)	177, 354
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	55, 86
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	6, 125
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	137, 297
SatI	GCNGC	2 cut(s)	54, 85
Sau3AI	GATC	5 cut(s)	123, 222, 282, 388, 442
SetI	ASST	7 cut(s)	89, 152, 208, 280, 345, 411, 469
SfaNI	GCATC	2 cut(s)	103, 442
SmiMI	CAYNNNNRTG	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	2 cut(s)	268, 345
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	312, 353
TaaI	ACNGT	2 cut(s)	9, 76
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	221, 285
TasI	AATT	2 cut(s)	268, 345
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	137, 297
Tru9I	TTAA	2 cut(s)	137, 297
TseI	GCWGC	2 cut(s)	53, 84
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	2 cut(s)	215, 312
VspI	ATTAAT	1 cut(s)	137
XceI	RCATGY	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	177, 354
XspI	CTAG	2 cut(s)	312, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.