Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

54379167 .. 54383336

Gene Structure 4170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGCTCGCTCTACATCAATGCTTACGATGACTGCACTGTGAATTGGAATAGTGTACCACCGTGCAGTTCTGTTGATACCACGACCCAGATTCCACCAAGCGATGATGATGCGGTTAGCATCCAATTTATGTTGTACAAGGAAACCAAACACACTCTTGCACCAGATAGTTGCACTCAAGAAATTTGGATGATCCCCAACACAACAAAGGTCATTACAGTCCGTCCTTCCGAGTTATGCAACCACGACTCTACTACTATTATGCAATCTTCTTCAGGGCGTATGATTGTGGACTTTATTGATACCCATTTTCCTCCTCAACACAAAATACATGTCCCTAAAGTTGTGGAGAAAATAATTGATCTTGTTCAGAGCTCCATTCCCTTGGTTCTTAATGATTTCATTGATGTGCGACGAATTGAAGGGATTGAAATTTTGCGCCATCCTTATAGTGAAGCCGCTAAAGCCTACATACCCTTCATACCTAAAGGGTGGGCTGTGTTCGAGAGTGATAACCAAATCGTGGTTGGAGATGTTTGTGCTTTCGAGCTGGTGAAAAAGAACAAAAATGGCGGTTCACATTCTCCGGAAGTAATTAATGTCAAGCTGTTGGGATGCGACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

209

Amino Acids

23.27

Weight (kDa)

5.28

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	3 cut(s)	113, 459, 573
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	183, 432
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	57, 137
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	422, 431
AluBI	AGCT	3 cut(s)	375, 550, 607
AluI	AGCT	3 cut(s)	375, 550, 607
Alw21I	GWGCWC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	586
ApoI	RAATTY	2 cut(s)	183, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AseI	ATTAAT	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	8, 377
Bbv12I	GWGCWC	1 cut(s)	377
BccI	CCATC	1 cut(s)	450
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmsI	GCATC	3 cut(s)	100, 129, 605
BpuEI	CTTGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
BseAI	TCCGGA	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	4 cut(s)	120, 195, 442, 620
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	19, 85
Bsh1285I	CGRYCG	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	8, 377
Bsp13I	TCCGGA	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	192, 361
BspACI	CCGC	3 cut(s)	113, 459, 573
BspEI	TCCGGA	1 cut(s)	586
BspPI	GGATC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	192, 361
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	40, 63, 220, 623
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	8
BstF5I	GGATG	4 cut(s)	120, 195, 442, 620
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	2 cut(s)	195, 364
BstMBI	GATC	2 cut(s)	192, 361
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	120, 195, 442, 620
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	441
Csp6I	GTAC	2 cut(s)	56, 136
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	7 cut(s)	6, 375, 458, 467, 497, 550, 607
CviKI_1	RGCY	7 cut(s)	6, 375, 458, 467, 497, 550, 607
CviQI	GTAC	2 cut(s)	56, 136
DpnI	GATC	2 cut(s)	194, 363
DpnII	GATC	2 cut(s)	192, 361
Ecl136II	GAGCTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	8, 377
Eco53kI	GAGCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	2 cut(s)	8, 377
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	335
FaiI	YATR	8 cut(s)	131, 238, 263, 284, 333, 450, 473, 482
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	107, 202, 429
FriOI	GRGCYC	2 cut(s)	8, 377
Fsp4HI	GCNGC	1 cut(s)	459
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	1 cut(s)	459
HapII	CCGG	1 cut(s)	587
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	91, 248
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	3 cut(s)	56, 292, 578
Hpy188I	TCNGA	2 cut(s)	232, 372
Hpy188III	TCNNGA	3 cut(s)	179, 505, 587
Hpy8I	GTNNAC	3 cut(s)	56, 292, 578
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	3 cut(s)	237, 416, 487
HpyCH4III	ACNGT	4 cut(s)	40, 63, 220, 623
HpyCH4V	TGCA	6 cut(s)	36, 66, 161, 174, 240, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	439
Kpn2I	TCCGGA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	192, 361
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	5 cut(s)	101, 177, 261, 536, 600
LweI	GCATC	3 cut(s)	100, 129, 605
MalI	GATC	2 cut(s)	194, 363
MboI	GATC	2 cut(s)	192, 361
MboII	GAAGA	2 cut(s)	261, 264
MhlI	GDGCHC	2 cut(s)	8, 377
MluCI	AATT	7 cut(s)	43, 125, 183, 357, 417, 432, 594
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	2 cut(s)	324, 327
MroI	TCCGGA	1 cut(s)	586
MseI	TTAA	3 cut(s)	393, 597, 625
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	2 cut(s)	192, 361
NlaIII	CATG	1 cut(s)	335
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	377
RsaI	GTAC	2 cut(s)	57, 137
RsaNI	GTAC	2 cut(s)	56, 136
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	393, 597, 625
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	192, 361
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	8, 377
SetI	ASST	5 cut(s)	213, 377, 487, 552, 609
SfaNI	GCATC	3 cut(s)	100, 129, 605
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	7 cut(s)	43, 125, 183, 357, 417, 432, 594
SsiI	CCGC	3 cut(s)	113, 459, 573
SstI	GAGCTC	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	4 cut(s)	40, 63, 220, 623
TaqI	TCGA	2 cut(s)	504, 546
TasI	AATT	7 cut(s)	43, 125, 183, 357, 417, 432, 594
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	393, 597, 625
Tru9I	TTAA	3 cut(s)	393, 597, 625
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	391, 469
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	183, 432
XceI	RCATGY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.