Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

2010001 .. 2010879

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCATCGTTCTGCATCAATGCTTACGATCTATGCAATGTGAGTTGGAATAGTGTACCGTACAGCTCTGTTGATACCTCGGCCCTGATTCTACCAAGTGATGATGCGCTTAAGATCCAATTTATGTTCTACAAGGAAACCAAACACACTTCTGCACCAGATGATACTCAAGAAATTTGGATGATCCCCAACACAACAGAGATCATTACAGTCCGTCCTTCCGAGTTATACAACCACGATTCTACTAGTATTATGCAATCTTCTTCACGGCGTATGATCGTGGACTTTATTAACACCCATTTTCCTCCTCAGGACAAAATACATTTCCCCAAAGAAGGGGTAGCAATTGTTGATCTTGTTCAACACTCCATTCCCTTCGTTCCTAATGGTTCCACTGATGTGCGACGAATTGAAGGGATTGAAATTTTGCGTCATCCTATAGATGAAGCGACTAAAGCCTACATGATCGATGACTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCATGTTTTTCATGGACCTTGCATTGTTAAGTGGTTGCAGATCGATCTTCATTGTCCCCTTTGCCGATATTCTTTGGAACGAACTGAAATAGCACCATGGTTTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

207

Amino Acids

23.74

Weight (kDa)

5.38

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	157 - 193	4.4e-10	Ring finger domain
zf-C3HC4	PF00097	167 - 192	8.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	168 - 192	7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	169 - 193	4.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	109, 178
AcsI	RAATTY	2 cut(s)	174, 423
AfaI	GTAC	2 cut(s)	57, 62
AfiI	CCNNNNNNNGG	2 cut(s)	335, 336
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	362, 413, 422
AhlI	ACTAGT	2 cut(s)	245, 494
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
AlwI	GGATC	2 cut(s)	109, 178
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	174, 423
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	82, 527
AvaII	GGWCC	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BcuI	ACTAGT	2 cut(s)	245, 494
BfaI	CTAG	2 cut(s)	246, 495
BfmI	CTRYAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	82, 527
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	2 cut(s)	24, 94
BpuEI	CTTGAG	1 cut(s)	153
Bsa29I	ATCGAT	2 cut(s)	468, 555
BsaJI	CCNNGG	2 cut(s)	78, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 336
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	43
BseCI	ATCGAT	2 cut(s)	468, 555
BseDI	CCNNGG	2 cut(s)	78, 608
BseGI	GGATG	2 cut(s)	186, 433
BseLI	CCNNNNNNNGG	2 cut(s)	335, 336
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	2 cut(s)	468, 555
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	2 cut(s)	335, 336
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
Bsp19I	CCATGG	1 cut(s)	608
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	2 cut(s)	468, 555
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	109, 178
BspTI	CTTAAG	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	78, 608
BssMI	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
BssT1I	CCWWGG	1 cut(s)	608
Bst4CI	ACNGT	2 cut(s)	60, 211
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	608
BstF5I	GGATG	2 cut(s)	186, 433
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	9 cut(s)	31, 117, 186, 204, 279, 355, 468, 555, 559
BstMBI	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 511
BstNSI	RCATGY	1 cut(s)	518
BstSFI	CTRYAG	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu15I	ATCGAT	2 cut(s)	468, 555
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	2 cut(s)	468, 555
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	186, 433
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	512
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	82, 527
ClaI	ATCGAT	2 cut(s)	468, 555
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	56, 61
CviAII	CATG	4 cut(s)	463, 515, 524, 609
CviJI	RGCY	3 cut(s)	66, 83, 458
CviKI_1	RGCY	3 cut(s)	66, 83, 458
CviQI	GTAC	2 cut(s)	56, 61
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	9 cut(s)	30, 116, 185, 203, 278, 354, 467, 554, 558
DpnII	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
Eco130I	CCWWGG	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	4 cut(s)	466, 518, 527, 612
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	462, 514, 523, 608
FokI	GGATG	2 cut(s)	193, 420
FspBI	CTAG	2 cut(s)	246, 495
GlaI	GCGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	83
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	466, 518, 527, 612
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	88, 239
Hpy166II	GTNNAC	2 cut(s)	56, 283
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	170, 311
Hpy8I	GTNNAC	2 cut(s)	56, 283
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	4 cut(s)	228, 329, 385, 407
HpyCH4III	ACNGT	2 cut(s)	60, 211
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	8 cut(s)	15, 36, 155, 256, 514, 534, 550, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 511
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	4 cut(s)	466, 518, 527, 612
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
LpnPI	CCDG	3 cut(s)	98, 171, 296
LweI	GCATC	2 cut(s)	24, 94
MaeI	CTAG	2 cut(s)	246, 495
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	9 cut(s)	30, 116, 185, 203, 278, 354, 467, 554, 558
MboI	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
MboII	GAAGA	3 cut(s)	252, 255, 551
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	5 cut(s)	119, 174, 345, 408, 423
MmeI	TCCRAC	2 cut(s)	26, 463
MnlI	CCTC	4 cut(s)	88, 315, 318, 472
Mph1103I	ATGCAT	1 cut(s)	622
MseI	TTAA	4 cut(s)	111, 291, 540, 615
MslI	CAYNNNNRTG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	455, 511
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
NlaIII	CATG	4 cut(s)	466, 518, 527, 612
NlaIV	GGNNCC	1 cut(s)	391
NmeAIII	GCCGAG	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	1 cut(s)	518
OliI	CACNNNNGTG	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	88, 239
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	82, 527
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	2 cut(s)	57, 62
RsaNI	GTAC	2 cut(s)	56, 61
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	111, 291, 540, 615
Sau3AI	GATC	9 cut(s)	28, 114, 183, 201, 276, 352, 465, 552, 556
Sau96I	GGNCC	2 cut(s)	82, 527
SetI	ASST	5 cut(s)	68, 80, 483, 490, 532
SfaNI	GCATC	2 cut(s)	24, 94
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	110, 168
SmoI	CTYRAG	2 cut(s)	110, 168
SpeI	ACTAGT	2 cut(s)	245, 494
Sse9I	AATT	5 cut(s)	119, 174, 345, 408, 423
SspMI	CTAG	2 cut(s)	246, 495
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	2 cut(s)	60, 211
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	3 cut(s)	468, 499, 555
TasI	AATT	5 cut(s)	119, 174, 345, 408, 423
TfiI	GAWTC	2 cut(s)	88, 239
Tru1I	TTAA	4 cut(s)	111, 291, 540, 615
Tru9I	TTAA	4 cut(s)	111, 291, 540, 615
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	3 cut(s)	459, 512, 551
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	400
Vha464I	CTTAAG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	2 cut(s)	174, 423
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	2 cut(s)	246, 495
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.