Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

14729192 .. 14729608

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAATCTTCTTCCGGGCGTATGATTGTGGACTTTATTGACACCCATTTTCCTCCTCAACACAAAATACATGTCCCCAAAGTTGTGGAGAAAATAATTGATCTTGTTCAAAGCGCCATTCCCTTGGTTCCTAAGGATTTCATTGATGTGCGACGAATTGAAGAGATTGAAATTTTGCGCCATCCTTATAGTGAAGCCGCTAAAGCCTACATACGTAATCGTTTTCAAGCTACGAAACGTGGGACATGTGCTATTTGTATGGATGACTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCATGTTTTTCATGGACCTTGCATTGTTAAGTGGCTGGAGATCGATCTTCATTGTCCCCTTTGCCGATATTCGTTTAAACTACGTGAACTCGCACCATGGTTTGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

138

Amino Acids

16.07

Weight (kDa)

8.25

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 124	2e-14	Ring finger domain
zf-C3HC4_2	PF13923	83 - 123	4.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	83 - 110	9.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	83 - 123	2.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	83 - 121	2.4e-06	RING-type zinc-finger
zf-rbx1	PF12678	100 - 124	3.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	171
AflIII	ACRYGT	2 cut(s)	70, 245
AgsI	TTSAA	4 cut(s)	110, 161, 170, 227
AhlI	ACTAGT	1 cut(s)	287
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	171
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	2 cut(s)	116, 180
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	132
BccI	CCATC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcnI	CCSGG	1 cut(s)	16
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	2 cut(s)	215, 389
BsaJI	CCNNGG	2 cut(s)	123, 401
Bse21I	CCTNAGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	123, 401
BseGI	GGATG	2 cut(s)	181, 268
BseRI	GAGGAG	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	3 cut(s)	59, 256, 345
BsmFI	GGGAC	3 cut(s)	59, 256, 345
Bsp143I	GATC	3 cut(s)	100, 345, 349
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	198
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	123, 401
BssMI	GATC	3 cut(s)	100, 345, 349
BssT1I	CCWWGG	2 cut(s)	123, 401
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	2 cut(s)	215, 389
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	181, 268
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 180
BstKTI	GATC	3 cut(s)	103, 348, 352
BstMBI	GATC	3 cut(s)	100, 345, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 304
BstNSI	RCATGY	3 cut(s)	74, 249, 311
BstSCI	CCNGG	1 cut(s)	14
BstSNI	TACGTA	1 cut(s)	215
BstXI	CCANNNNNNTGG	2 cut(s)	85, 124
Bsu15I	ATCGAT	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	181, 268
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	2 cut(s)	116, 180
Cfr13I	GGNCC	1 cut(s)	320
ClaI	ATCGAT	1 cut(s)	348
CviAII	CATG	5 cut(s)	71, 246, 308, 317, 402
CviJI	RGCY	4 cut(s)	197, 206, 230, 340
CviKI_1	RGCY	4 cut(s)	197, 206, 230, 340
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	3 cut(s)	102, 347, 351
DpnII	GATC	3 cut(s)	100, 345, 349
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco105I	TACGTA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	123, 401
Eco47I	GGWCC	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	123, 401
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	123, 401
FaeI	CATG	5 cut(s)	74, 249, 311, 320, 405
FaqI	GGGAC	3 cut(s)	59, 256, 345
FatI	CATG	5 cut(s)	70, 245, 307, 316, 401
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	168, 275
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	115, 179
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	117
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	2 cut(s)	116, 180
Hin1II	CATG	5 cut(s)	74, 249, 311, 320, 405
Hin6I	GCGC	2 cut(s)	114, 178
HinP1I	GCGC	2 cut(s)	114, 178
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	31, 392
Hpy8I	GTNNAC	2 cut(s)	31, 392
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4IV	ACGT	4 cut(s)	214, 238, 280, 388
HpyCH4V	TGCA	4 cut(s)	4, 307, 327, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 304
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	4 cut(s)	214, 238, 280, 388
Hsp92II	CATG	5 cut(s)	74, 249, 311, 320, 405
HspAI	GCGC	2 cut(s)	114, 178
Kzo9I	GATC	3 cut(s)	100, 345, 349
LpnPI	CCDG	2 cut(s)	28, 326
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	4 cut(s)	214, 238, 280, 388
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	102, 347, 351
MboI	GATC	3 cut(s)	100, 345, 349
MboII	GAAGA	3 cut(s)	3, 173, 344
MluCI	AATT	3 cut(s)	96, 156, 171
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	63, 66, 265
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	2 cut(s)	333, 381
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
MssI	GTTTAAAC	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	203, 304
NciI	CCSGG	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	100, 345, 349
NlaIII	CATG	5 cut(s)	74, 249, 311, 320, 405
NlaIV	GGNNCC	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	3 cut(s)	74, 249, 311
PciI	ACATGT	2 cut(s)	70, 245
PkrI	GCNGC	1 cut(s)	199
PmeI	GTTTAAAC	1 cut(s)	382
Ppu21I	YACGTR	2 cut(s)	215, 389
PscI	ACATGT	2 cut(s)	70, 245
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	333, 381
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	100, 345, 349
Sau96I	GGNCC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	7 cut(s)	217, 232, 241, 276, 283, 325, 391
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	3 cut(s)	96, 156, 171
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	123, 401
TaiI	ACGT	4 cut(s)	217, 241, 283, 391
TaqI	TCGA	2 cut(s)	292, 348
TasI	AATT	3 cut(s)	96, 156, 171
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	333, 381
Tru9I	TTAA	2 cut(s)	333, 381
TspDTI	ATGAA	3 cut(s)	130, 305, 344
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	3 cut(s)	74, 249, 311
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.