Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

14938895 .. 14940157

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCTGTGGTACCGACACCAATCACCATCTCCCGATACCGCACATTTGCTGCGGATTGGGCACCGTGCAGCGGCACTGATGAAATCTCAGGACACGAGATGATTCCACCTGGTGATGATGCGATCATGATCCGATTTATGTTCTACAAGGACACTATGTACACTTTTGCACCAGATGGAGCTGTTCAAGAGTATTGGATGATCCCCCACTCCCCAACAAAAGCCATCATGGTCCGTCCCTCCGAGTTCAATAACCAGGATGCTATTAGTATTCTGCAATCTCCTTCAGGGCGTATGATGATAGACTTCATCAACACCCATTTTCCTTCAAAAGACAAACCACTCCTAGTGCCTAAACTTGTCGCAACACTAGTTGAGCTTGTTCAGAGTTCCATTGGATCAGAAACCGAGGGTTTTATTGATGTGCGTAAATGTGAGACAGTTGAAATTTTGCTTCATCTTAATGATGATGAAGCGACTAAACCGTGTATGCAGGGTTATTTTGAAGCTACGAGATGTGGGACATGTGCTATTTGTTTGGAAGATTATGAGATTGGACATGATGATGGTATTCGATTACCTTGCGTGCATGGTTTTCATGGAAGTTGCATTTATGAGTGGCTGATGATCAATTCCCGCTGCCCCGTTTGCTGCGATACTTTTAGTGAAACTGAACTAATACCGTGGTTTAATGCACCTTTGCAGGACGGAATTTGGTTGTCGCATTCCTCTGTTGGTTCAGTGGCCAGTCGAGAAACTTCCAAAAAACTTTCTGTTCCAACGCATTCCTCTGTTGGTTCAGTGGATAATCGCGAAATTTCATATTTTTCGTTCCAACGCATTCCTATGTTGATTCAGTGCATAATCCAGAAATTTCTCAAGAATTTTCAGTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

300

Amino Acids

33.72

Weight (kDa)

5.17

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	175 - 217	5.1e-11	Ring finger domain
zf-C3HC4_2	PF13923	176 - 217	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	176 - 217	3.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	176 - 204	1.8e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	2 cut(s)	10, 61
AccII	CGCG	1 cut(s)	813
AciI	CCGC	4 cut(s)	40, 53, 72, 637
AclWI	GGATC	3 cut(s)	124, 196, 406
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	5 cut(s)	447, 711, 816, 872, 883
AcuI	CTGAAG	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	2 cut(s)	12, 161
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	188, 250, 330, 446, 506
AhlI	ACTAGT	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	109, 255
AluBI	AGCT	3 cut(s)	182, 379, 509
AluI	AGCT	3 cut(s)	182, 379, 509
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	124, 196, 406
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	4 cut(s)	50, 69, 639, 651
ApoI	RAATTY	5 cut(s)	447, 711, 816, 872, 883
Asp718I	GGTACC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	16, 125
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	746
BanI	GGYRCC	2 cut(s)	10, 61
BauI	CACGAG	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	37, 81, 626, 638
BccI	CCATC	4 cut(s)	35, 170, 233, 560
BcgI	CGANNNNNNTGC	2 cut(s)	564, 598
BciT130I	CCWGG	2 cut(s)	111, 257
BclI	TGATCA	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	2 cut(s)	347, 371
BisI	GCNGC	5 cut(s)	51, 70, 73, 640, 652
BlsI	GCNGC	5 cut(s)	52, 71, 74, 641, 653
Bme1390I	CCNGG	2 cut(s)	111, 257
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	12, 63
BmrFI	CCNGG	2 cut(s)	111, 257
BmsI	GCATC	2 cut(s)	109, 250
BpuEI	CTTGAG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	408, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	111, 257
BseDI	CCNNGG	2 cut(s)	408, 683
BseGI	GGATG	2 cut(s)	204, 265
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	747
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	37, 81, 626, 638
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	2 cut(s)	10, 61
BslFI	GGGAC	2 cut(s)	222, 535
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	222, 535
BsmI	GAATGC	3 cut(s)	724, 784, 840
BsnI	GGCC	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	123, 129, 201, 398, 627
Bsp68I	TCGCGA	1 cut(s)	813
BspACI	CCGC	4 cut(s)	40, 53, 72, 637
BspANI	GGCC	1 cut(s)	746
BspCNI	CTCAG	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	12, 63
BspPI	GGATC	3 cut(s)	124, 196, 406
BspT107I	GGYRCC	2 cut(s)	10, 61
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	2 cut(s)	408, 683
BssMI	GATC	5 cut(s)	123, 129, 201, 398, 627
BssSI	CACGAG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	111, 257
Bst4CI	ACNGT	4 cut(s)	66, 442, 486, 684
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	2 cut(s)	204, 265
BstFNI	CGCG	1 cut(s)	813
BstKTI	GATC	5 cut(s)	126, 132, 204, 401, 630
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	5 cut(s)	123, 129, 201, 398, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 648
BstNI	CCWGG	2 cut(s)	111, 257
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	109, 255
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	4 cut(s)	37, 81, 626, 638
BsuRI	GGCC	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	683
BtsCI	GGATG	2 cut(s)	204, 265
BtsIMutI	CAGTG	4 cut(s)	75, 747, 807, 863
BtuMI	TCGCGA	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	587
CciI	TCATGA	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	11, 160
CviAII	CATG	6 cut(s)	127, 229, 525, 560, 590, 599
CviJI	RGCY	6 cut(s)	182, 224, 379, 509, 622, 746
CviKI_1	RGCY	6 cut(s)	182, 224, 379, 509, 622, 746
CviQI	GTAC	2 cut(s)	11, 160
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	5 cut(s)	125, 131, 203, 400, 629
DpnII	GATC	5 cut(s)	123, 129, 201, 398, 627
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	109, 255
FaeI	CATG	6 cut(s)	130, 232, 528, 563, 593, 602
FaqI	GGGAC	2 cut(s)	222, 535
FatI	CATG	6 cut(s)	126, 228, 524, 559, 589, 598
FauI	CCCGC	1 cut(s)	644
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	5 cut(s)	51, 70, 73, 640, 652
FokI	GGATG	2 cut(s)	211, 272
Fsp4HI	GCNGC	5 cut(s)	51, 70, 73, 640, 652
FspBI	CTAG	2 cut(s)	347, 371
GluI	GCNGC	5 cut(s)	51, 70, 73, 640, 652
HaeIII	GGCC	1 cut(s)	746
Hin1II	CATG	6 cut(s)	130, 232, 528, 563, 593, 602
HinfI	GANTC	2 cut(s)	103, 853
HphI	GGTGA	2 cut(s)	16, 125
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	5 cut(s)	134, 244, 387, 403, 896
Hpy188III	TCNNGA	8 cut(s)	33, 90, 127, 188, 752, 812, 868, 880
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	294, 336
HpyCH4III	ACNGT	4 cut(s)	66, 442, 486, 684
HpyCH4V	TGCA	9 cut(s)	69, 170, 277, 493, 589, 609, 695, 703, 861
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 648
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	130, 232, 528, 563, 593, 602
KpnI	GGTACC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	123, 129, 201, 398, 627
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	4 cut(s)	37, 81, 626, 638
LweI	GCATC	2 cut(s)	109, 250
MabI	ACCWGGT	1 cut(s)	109
MaeI	CTAG	2 cut(s)	347, 371
MalI	GATC	5 cut(s)	125, 131, 203, 400, 629
MboI	GATC	5 cut(s)	123, 129, 201, 398, 627
MboII	GAAGA	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	6 cut(s)	447, 631, 711, 816, 872, 883
MluNI	TGGCCA	1 cut(s)	746
MmeI	TCCRAC	2 cut(s)	803, 859
MnlI	CCTC	4 cut(s)	250, 403, 739, 799
Mox20I	TGGCCA	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	2 cut(s)	462, 690
MslI	CAYNNNNRTG	3 cut(s)	462, 564, 845
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	2 cut(s)	72, 639
MspR9I	CCNGG	2 cut(s)	111, 257
Mva1269I	GAATGC	3 cut(s)	724, 784, 840
MvaI	CCWGG	2 cut(s)	111, 257
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	2 cut(s)	59, 648
NdeII	GATC	5 cut(s)	123, 129, 201, 398, 627
NlaIII	CATG	6 cut(s)	130, 232, 528, 563, 593, 602
NlaIV	GGNNCC	2 cut(s)	12, 63
NruI	TCGCGA	1 cut(s)	813
NspI	RCATGY	1 cut(s)	528
PagI	TCATGA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	524
PctI	GAATGC	3 cut(s)	724, 784, 840
PfeI	GAWTC	2 cut(s)	103, 853
PkrI	GCNGC	5 cut(s)	52, 71, 74, 641, 653
PscI	ACATGT	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	109, 255
PspGI	CCWGG	2 cut(s)	109, 255
PspN4I	GGNNCC	2 cut(s)	12, 63
PspPI	GGNCC	1 cut(s)	232
RruI	TCGCGA	1 cut(s)	813
RsaI	GTAC	2 cut(s)	12, 161
RsaNI	GTAC	2 cut(s)	11, 160
RseI	CAYNNNNRTG	3 cut(s)	462, 564, 845
SaqAI	TTAA	2 cut(s)	462, 690
SatI	GCNGC	5 cut(s)	51, 70, 73, 640, 652
Sau3AI	GATC	5 cut(s)	123, 129, 201, 398, 627
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	111, 257
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	6 cut(s)	112, 184, 381, 511, 583, 700
SexAI	ACCWGGT	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	109, 250
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	3 cut(s)	462, 564, 845
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	6 cut(s)	447, 631, 711, 816, 872, 883
SsiI	CCGC	4 cut(s)	40, 53, 72, 637
SspMI	CTAG	2 cut(s)	347, 371
StyD4I	CCNGG	2 cut(s)	109, 255
TaaI	ACNGT	4 cut(s)	66, 442, 486, 684
TaqI	TCGA	2 cut(s)	574, 751
TasI	AATT	6 cut(s)	447, 631, 711, 816, 872, 883
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	103, 853
Tru1I	TTAA	2 cut(s)	462, 690
Tru9I	TTAA	2 cut(s)	462, 690
TscAI	CASTG	4 cut(s)	82, 747, 807, 863
TseI	GCWGC	4 cut(s)	50, 69, 639, 651
TspDTI	ATGAA	6 cut(s)	96, 298, 446, 486, 587, 810
TspGWI	ACGGA	2 cut(s)	224, 723
TspRI	CASTG	4 cut(s)	82, 747, 807, 863
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	5 cut(s)	447, 711, 816, 872, 883
XceI	RCATGY	1 cut(s)	528
XspI	CTAG	2 cut(s)	347, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.