Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

2827790 .. 2828410

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCATTGTGGATTACTAATGATCGAGCATGGCCGAACGCAGGGGACGTGATTCCACTGGGCGATGAGCTCAAGATCCATTTTGTATTTTACAAGCAAACCATACATCTATTTGACACTGTTAAAGAAGAATACAACTTAGTCCACAGTGAAAAGATTATTACGATCCATCCTTCCGAGCTACGTAATGAAGATACTGCTAGTATTATGCAATCTCCTTCAATGCGTATGATCAAGCAGATTATTGACACCGAAATTCCTTCATCAGAAAAGTCAGTGCGGCTTGAAGTCGAGGAAGGTATACTTCGAATTGTTCAGAACCCAAATACACCCATCTTAGTGTCTCCTAACCATAGGATTTTTGTTAAAGCACTTGATGGGATTAAGATATTGCACGATGCTAGTGAGAAGAGTTTGAAACGGAGAGTACATGATCATTTGGAAGCTGCGCGATGCTCAACATGTCCTATTTGTATGGACGAGATAAAGCTTAATAAACCTACTCGATTGCCTTGCTTGCACTTGTTTCATCACTGGTGCGTTTCTAAGTGGCTGGAGATCAAGCACGAATGCCCCTATTGCCGAAGTCCAGTACCTCATGAATTTGTTACATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

206

Amino Acids

24.0

Weight (kDa)

6.66

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	154 - 195	7e-12	Ring finger domain
zf-C3HC4_2	PF13923	155 - 194	4.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	155 - 194	4.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	155 - 181	1e-05	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	451
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	70, 160
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	255, 602
AfaI	GTAC	2 cut(s)	429, 594
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	222, 287, 418
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	4 cut(s)	70, 181, 446, 490
AluI	AGCT	4 cut(s)	70, 181, 446, 490
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	70, 160
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	255, 602
AspLEI	GCGC	1 cut(s)	451
AsuII	TTCGAA	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	177, 341, 371
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BclI	TGATCA	2 cut(s)	231, 433
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	201, 402
BisI	GCNGC	2 cut(s)	281, 447
BlsI	GCNGC	2 cut(s)	282, 448
BmgBI	CACGTC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	388, 443
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	575
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	63, 539, 590
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	63, 539, 590
BseXI	GCAGC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	598
BspPI	GGATC	2 cut(s)	70, 160
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	3 cut(s)	63, 539, 590
BssMI	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
BssNAI	GTATAC	1 cut(s)	302
Bst1107I	GTATAC	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	121, 149
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	139, 337, 546
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	6 cut(s)	25, 78, 168, 234, 436, 561
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	517, 579
BstNSI	RCATGY	1 cut(s)	465
BstSNI	TACGTA	1 cut(s)	185
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	34
BtgZI	GCGATG	2 cut(s)	78, 466
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	5 cut(s)	56, 117, 154, 282, 532
Cac8I	GCNNGC	1 cut(s)	518
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	428, 593
CviAII	CATG	5 cut(s)	30, 431, 462, 599, 612
CviJI	RGCY	7 cut(s)	34, 70, 181, 283, 446, 490, 553
CviKI_1	RGCY	7 cut(s)	34, 70, 181, 283, 446, 490, 553
CviQI	GTAC	2 cut(s)	428, 593
DdeI	CTNAG	3 cut(s)	139, 337, 546
DpnI	GATC	6 cut(s)	24, 77, 167, 233, 435, 560
DpnII	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	70
Eco105I	TACGTA	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	5 cut(s)	33, 434, 465, 602, 615
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	29, 430, 461, 598, 611
FbaI	TGATCA	2 cut(s)	231, 433
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	281, 447
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	281, 447
FspBI	CTAG	2 cut(s)	201, 402
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	281, 447
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	33, 434, 465, 602, 615
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	145, 302
Hpy188I	TCNGA	3 cut(s)	178, 268, 318
Hpy188III	TCNNGA	2 cut(s)	73, 599
Hpy8I	GTNNAC	2 cut(s)	145, 302
HpyAV	CCTTC	4 cut(s)	183, 228, 270, 290
HpyCH4III	ACNGT	2 cut(s)	121, 149
HpyCH4IV	ACGT	2 cut(s)	48, 184
HpyCH4V	TGCA	3 cut(s)	211, 394, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	517, 579
HpyF3I	CTNAG	3 cut(s)	139, 337, 546
HpySE526I	ACGT	2 cut(s)	48, 184
Hsp92II	CATG	5 cut(s)	33, 434, 465, 602, 615
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	2 cut(s)	231, 433
Kzo9I	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
LpnPI	CCDG	5 cut(s)	27, 44, 520, 539, 603
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	2 cut(s)	388, 443
MaeI	CTAG	2 cut(s)	201, 402
MaeII	ACGT	2 cut(s)	48, 184
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	6 cut(s)	24, 77, 167, 233, 435, 560
MboI	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
MboII	GAAGA	3 cut(s)	140, 203, 421
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	3 cut(s)	255, 309, 602
MnlI	CCTC	2 cut(s)	286, 606
MseI	TTAA	5 cut(s)	123, 366, 384, 492, 619
MslI	CAYNNNNRTG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	575
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	517, 579
NdeII	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
NlaIII	CATG	5 cut(s)	33, 434, 465, 602, 615
NspI	RCATGY	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	307
PagI	TCATGA	1 cut(s)	598
PciI	ACATGT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	282, 448
Ppu21I	YACGTR	1 cut(s)	185
PscI	ACATGT	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	2 cut(s)	429, 594
RsaNI	GTAC	2 cut(s)	428, 593
RseI	CAYNNNNRTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	5 cut(s)	123, 366, 384, 492, 619
SatI	GCNGC	2 cut(s)	281, 447
Sau3AI	GATC	6 cut(s)	22, 75, 165, 231, 433, 558
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	51, 72, 183, 187, 301, 448, 492, 502, 598
SfaNI	GCATC	2 cut(s)	388, 443
SfuI	TTCGAA	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	3 cut(s)	255, 309, 602
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	201, 402
SstI	GAGCTC	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	121, 149
TaiI	ACGT	2 cut(s)	51, 187
TaqI	TCGA	4 cut(s)	25, 291, 307, 505
TasI	AATT	3 cut(s)	255, 309, 602
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	5 cut(s)	123, 366, 384, 492, 619
Tru9I	TTAA	5 cut(s)	123, 366, 384, 492, 619
TscAI	CASTG	5 cut(s)	63, 124, 154, 282, 539
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	204, 252, 518, 615
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	5 cut(s)	63, 124, 154, 282, 539
XapI	RAATTY	2 cut(s)	255, 602
XceI	RCATGY	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	2 cut(s)	201, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.