Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

2766011 .. 2767196

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACATTGGCCACCTTCCGTGTTTACAATTCATGCAATGCGAAATGCAATCGTATAGTGTGCAGCTCTGTTGATACCAGCTCAGCCCAGATTCCACAAAGTGATGATGATGCTCTTGAGATCAAATTTTCAGTGTACAAGGAAACCAAACACACTTTTACACCAGAGAGATACACTCAAGAAATTTGGACGATCCCCTACACAACAAAGGTCATTTCAGTCCGTCCTTCCGAGTTCTACAACCTCGATTCTACTAGTATTATGCAATCTTCTTCAGGGCTTATGATCGTAAACTTTATTAATACTAATTTTCCTCCTGAAGACAAAATACAGCTCCCCAAAATTGTGGCAGCAATAATTGATCTTGTTCAAAAATTCATTCCCTTGGTTCCTAATGGTTTCATTCATGTGCGACGAATTGAAAGGGTTGAAATTGTGCATCATGTTGATGATGAAAACTCCCACGAGAGGCTCAATGTTAACAAGGCTGTTAACATGTATAATGTGAAGAAAGATAAGAAGCAAAGCAACAGACCGGAGAAGTCTTCAGGAACCCTAGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000055 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000478 GO:0000479 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015711 GO:0015748 GO:0015780 GO:0015833 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0033750 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0042274 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051503 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0055085 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0090304 GO:0090305 GO:0090480 GO:0090501 GO:0090502 GO:1901264 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRS1

Protein Analysis

189

Amino Acids

21.45

Weight (kDa)

8.38

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	125, 183, 374
AcuI	CTGAAG	3 cut(s)	258, 339, 531
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	371, 422, 431
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	3 cut(s)	66, 81, 334
AluI	AGCT	3 cut(s)	66, 81, 334
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	63, 350
ApoI	RAATTY	3 cut(s)	125, 183, 374
AseI	ATTAAT	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	327, 537
BbvI	GCAGC	2 cut(s)	75, 362
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	2 cut(s)	255, 557
BisI	GCNGC	2 cut(s)	64, 351
BlpI	GCTNAGC	1 cut(s)	82
BlsI	GCNGC	2 cut(s)	65, 352
BmiI	GGNNCC	2 cut(s)	390, 553
BmsI	GCATC	2 cut(s)	100, 448
BpiI	GAAGAC	2 cut(s)	327, 537
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu1102I	GCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	137, 162
BsaJI	CCNNGG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	75, 362
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	468
BsnI	GGCC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	120, 192, 285, 361
Bsp1720I	GCTNAGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	390, 553
BspPI	GGATC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	561
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	4 cut(s)	120, 192, 285, 361
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	82
BstKTI	GATC	4 cut(s)	123, 195, 288, 364
BstMBI	GATC	4 cut(s)	120, 192, 285, 361
BstNSI	RCATGY	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	75, 362
BstV2I	GAAGAC	2 cut(s)	327, 537
BstXI	CCANNNNNNTGG	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	33, 407, 443, 496
CviJI	RGCY	9 cut(s)	11, 66, 81, 86, 280, 334, 472, 488, 560
CviKI_1	RGCY	9 cut(s)	11, 66, 81, 86, 280, 334, 472, 488, 560
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	4 cut(s)	122, 194, 287, 363
DpnII	GATC	4 cut(s)	120, 192, 285, 361
DraIII	CACNNNGTG	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	384
Eco57I	CTGAAG	3 cut(s)	258, 339, 531
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	4 cut(s)	36, 410, 446, 499
FaiI	YATR	8 cut(s)	34, 56, 263, 284, 408, 444, 497, 501
FatI	CATG	4 cut(s)	32, 406, 442, 495
Fnu4HI	GCNGC	2 cut(s)	64, 351
Fsp4HI	GCNGC	2 cut(s)	64, 351
FspBI	CTAG	2 cut(s)	255, 557
GluI	GCNGC	2 cut(s)	64, 351
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	536
Hin1II	CATG	4 cut(s)	36, 410, 446, 499
HincII	GTYRAC	2 cut(s)	481, 493
HindII	GTYRAC	2 cut(s)	481, 493
HinfI	GANTC	2 cut(s)	91, 248
HpaI	GTTAAC	2 cut(s)	481, 493
HpaII	CCGG	1 cut(s)	536
Hpy166II	GTNNAC	5 cut(s)	25, 136, 292, 481, 493
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	116, 179, 317, 549
Hpy8I	GTNNAC	5 cut(s)	25, 136, 292, 481, 493
Hpy99I	CGWCG	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	25, 237
HpyCH4V	TGCA	5 cut(s)	36, 48, 63, 265, 439
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	4 cut(s)	36, 410, 446, 499
KspAI	GTTAAC	2 cut(s)	481, 493
Kzo9I	GATC	4 cut(s)	120, 192, 285, 361
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	7 cut(s)	91, 101, 177, 261, 330, 534, 549
Lsp1109I	GCAGC	2 cut(s)	75, 362
LweI	GCATC	2 cut(s)	100, 448
MaeI	CTAG	2 cut(s)	255, 557
MalI	GATC	4 cut(s)	122, 194, 287, 363
MboI	GATC	4 cut(s)	120, 192, 285, 361
MboII	GAAGA	5 cut(s)	261, 264, 332, 520, 537
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	9 cut(s)	28, 125, 183, 307, 342, 357, 374, 417, 432
MluNI	TGGCCA	1 cut(s)	11
MnlI	CCTC	3 cut(s)	254, 324, 462
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	4 cut(s)	300, 480, 492, 565
MslI	CAYNNNNRTG	2 cut(s)	407, 447
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	536
NdeII	GATC	4 cut(s)	120, 192, 285, 361
NlaIII	CATG	4 cut(s)	36, 410, 446, 499
NlaIV	GGNNCC	2 cut(s)	390, 553
NspI	RCATGY	1 cut(s)	499
PciI	ACATGT	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	91, 248
PkrI	GCNGC	2 cut(s)	65, 352
PscI	ACATGT	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	390, 553
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	407, 447
SaqAI	TTAA	4 cut(s)	300, 480, 492, 565
SatI	GCNGC	2 cut(s)	64, 351
Sau3AI	GATC	4 cut(s)	120, 192, 285, 361
SetI	ASST	6 cut(s)	17, 68, 83, 213, 246, 336
SfaNI	GCATC	2 cut(s)	100, 448
SmiMI	CAYNNNNRTG	2 cut(s)	407, 447
SmlI	CTYRAG	2 cut(s)	116, 177
SmoI	CTYRAG	2 cut(s)	116, 177
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	9 cut(s)	28, 125, 183, 307, 342, 357, 374, 417, 432
SspMI	CTAG	2 cut(s)	255, 557
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	1 cut(s)	246
TasI	AATT	9 cut(s)	28, 125, 183, 307, 342, 357, 374, 417, 432
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	91, 248
Tru1I	TTAA	4 cut(s)	300, 480, 492, 565
Tru9I	TTAA	4 cut(s)	300, 480, 492, 565
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	63, 350
TspDTI	ATGAA	5 cut(s)	21, 367, 391, 395, 468
TspGWI	ACGGA	2 cut(s)	8, 212
TspRI	CASTG	1 cut(s)	138
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	3 cut(s)	125, 183, 374
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	2 cut(s)	255, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.