Rh1DG031100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001005
Physical Location & Seq
Forward (+)
4604570 .. 4604926
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG031100.1

Sequence Viewer

Length: 357 bp
ATGAGCCAACGAGTGCTGATGTCCTTAGGATCCAATTTGTATTCGGCAGGTCAACCCGGCCAACATGCTATTGGAACATTTGCAAATGTTTGTGAAGGATTTATTATCAGTGAAGCTGGAAAGTTCATCTCGATCCGTCCTTCTGAGTTATGTATTGAGGATATGGCTAGTGTTAAGCAATCCCATTCCATATGTGTGATCGAGGACTTCATTAAAACCGAGTTTCCTGAAGAAAAACCGTCTTCTATTGTGGACAAGGTAATTGAACTAGTTCAGAACTCAATCGGCTCTCCTTTGCCTCCTGATCGTGTTATCGATGTGAAGTTGATAGATGGGGTTGATTGTGCATCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.79

Weight (kDa)

4.63

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 38
AclWI GGATC 3 cut(s) 24, 37, 127
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 266
AhlI ACTAGT 1 cut(s) 268
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 3 cut(s) 24, 37, 127
AoxI GGCC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 234
BccI CCATC 1 cut(s) 326
BcnI CCSGG 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 268
BfaI CTAG 2 cut(s) 168, 269
BfuAI ACCTGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 315
Bse21I CCTNAGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 315
BseMII CTCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 4 cut(s) 29, 132, 198, 304
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 24, 37, 127
BssMI GATC 4 cut(s) 29, 132, 198, 304
Bst4CI ACNGT 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 25, 144
BstKTI GATC 4 cut(s) 32, 135, 201, 307
BstMBI GATC 4 cut(s) 29, 132, 198, 304
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 38
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 1 cut(s) 65
CviJI RGCY 5 cut(s) 6, 60, 116, 167, 288
CviKI_1 RGCY 5 cut(s) 6, 60, 116, 167, 288
DdeI CTNAG 2 cut(s) 25, 144
DpnI GATC 4 cut(s) 31, 134, 200, 306
DpnII GATC 4 cut(s) 29, 132, 198, 304
EaeI YGGCCR 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 249
Eco81I CCTNAGG 1 cut(s) 25
FaeI CATG 1 cut(s) 68
FaiI YATR 6 cut(s) 66, 151, 164, 191, 193, 352
FatI CATG 1 cut(s) 64
FauNDI CATATG 1 cut(s) 191
FspBI CTAG 2 cut(s) 168, 269
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 57
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 2 cut(s) 53, 253
Hpy188I TCNGA 2 cut(s) 145, 276
Hpy188III TCNNGA 3 cut(s) 130, 227, 302
Hpy8I GTNNAC 2 cut(s) 53, 253
HpyAV CCTTC 2 cut(s) 89, 150
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 83, 347
HpyF3I CTNAG 2 cut(s) 25, 144
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 4 cut(s) 29, 132, 198, 304
LpnPI CCDG 5 cut(s) 33, 70, 102, 240, 315
MaeI CTAG 2 cut(s) 168, 269
MalI GATC 4 cut(s) 31, 134, 200, 306
MboI GATC 4 cut(s) 29, 132, 198, 304
MboII GAAGA 2 cut(s) 234, 242
MflI RGATCY 1 cut(s) 29
MluCI AATT 2 cut(s) 34, 261
MnlI CCTC 3 cut(s) 151, 196, 309
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 174, 213
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 57
NciI CCSGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 191
NdeII GATC 4 cut(s) 29, 132, 198, 304
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 174, 213
Sau3AI GATC 4 cut(s) 29, 132, 198, 304
ScrFI CCNGG 1 cut(s) 57
SetI ASST 3 cut(s) 52, 118, 261
SmiMI CAYNNNNRTG 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 268
Sse9I AATT 2 cut(s) 34, 261
SspMI CTAG 2 cut(s) 168, 269
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 131, 201, 315
TasI AATT 2 cut(s) 34, 261
Tru1I TTAA 2 cut(s) 174, 213
Tru9I TTAA 2 cut(s) 174, 213
TscAI CASTG 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 115, 199
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 2 cut(s) 168, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.