Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

89419066 .. 89424054

Gene Structure 4989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTTTCGTCAAAGAACTATACCATCCAGCCTTATTATGATGGCGCAATGGCATTGTGGATTACTAATGATCGAGCATGGCCGAACCATAATGCAGGGGACGTGATTCCACTGAGCGATGAGCTCAAGATCCATTTTGTATTTTACAAGCAAACCATACATCTATTTGACACTTTTAAAGAAGAATACAACTTAGTCCACAGTCAAAAGATTATTACGATCCATCCTTCCGAGCTACGTAATGAAGATACTGCTAGTATTATGCAATCTCCTTCAATGCGTATGATCAAGCAGATTATTGACACCGAAATTCCTTCATCAGAAAAGTCAGTGCGGCTTGAAGTCGAGGAAGGTATAATTCGAATTGTTCAGAACCCAAAGACACCCATCTTAGTGTCTCCTAACCATAGGATTTTTGTTAAAGCACTTGATGGGATTAAGATATTGCACGATGCTAGTGAGAAGAGTTTGAAACGGAGAGTACATGATCATTTGGAAGCTGCGCGATGCTCAACATGTCCTATTTGTTTGGACGAGATAAAGCTTAATAAACCTACTCGATTGCCTTGCTTGCACTTGTTTCATCACTGGTGCGTTGCTAAGTGGCTGGAGATCAAGCACGAATGCCCCTATTGCCGAAGTCCAGTACCTCATGAATTTGTTGCATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

224

Amino Acids

26.15

Weight (kDa)

7.23

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	172 - 213	5.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	173 - 212	7.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	173 - 212	5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	173 - 199	9.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	505
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	124, 214
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	309, 656
AfaI	GTAC	2 cut(s)	483, 648
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	276, 341, 472
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	4 cut(s)	124, 235, 500, 544
AluI	AGCT	4 cut(s)	124, 235, 500, 544
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	124, 214
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	2 cut(s)	309, 656
AspLEI	GCGC	2 cut(s)	47, 505
AsuII	TTCGAA	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	5 cut(s)	32, 35, 231, 395, 425
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BclI	TGATCA	2 cut(s)	285, 487
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	2 cut(s)	255, 456
BisI	GCNGC	2 cut(s)	335, 501
BlsI	GCNGC	2 cut(s)	336, 502
BmgBI	CACGTC	1 cut(s)	103
BmsI	GCATC	2 cut(s)	442, 497
BpmI	CTGGAG	1 cut(s)	629
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	593, 644
Bse3DI	GCAATG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	24, 223
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	593, 644
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	652
BspPI	GGATC	2 cut(s)	124, 214
BspT104I	TTCGAA	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	593, 644
BssMI	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	4 cut(s)	113, 193, 391, 600
BstF5I	GGATG	2 cut(s)	24, 223
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	2 cut(s)	47, 505
BstKTI	GATC	6 cut(s)	73, 132, 222, 288, 490, 615
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	571, 633
BstNSI	RCATGY	1 cut(s)	519
BstSNI	TACGTA	1 cut(s)	239
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	487
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	82
BtgZI	GCGATG	2 cut(s)	132, 520
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	24, 223
BtsIMutI	CAGTG	3 cut(s)	110, 336, 586
Cac8I	GCNNGC	1 cut(s)	572
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	2 cut(s)	47, 505
Csp6I	GTAC	2 cut(s)	482, 647
CviAII	CATG	5 cut(s)	78, 485, 516, 653, 666
CviJI	RGCY	8 cut(s)	31, 82, 124, 235, 337, 500, 544, 607
CviKI_1	RGCY	8 cut(s)	31, 82, 124, 235, 337, 500, 544, 607
CviQI	GTAC	2 cut(s)	482, 647
DdeI	CTNAG	4 cut(s)	113, 193, 391, 600
DpnI	GATC	6 cut(s)	72, 131, 221, 287, 489, 614
DpnII	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
DraI	TTTAAA	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	124
Eco105I	TACGTA	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	5 cut(s)	81, 488, 519, 656, 669
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	5 cut(s)	77, 484, 515, 652, 665
FbaI	TGATCA	2 cut(s)	285, 487
Fnu4HI	GCNGC	2 cut(s)	335, 501
FokI	GGATG	2 cut(s)	11, 210
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	335, 501
FspBI	CTAG	2 cut(s)	255, 456
GlaI	GCGC	2 cut(s)	46, 504
GluI	GCNGC	2 cut(s)	335, 501
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	47, 505
Hin1II	CATG	5 cut(s)	81, 488, 519, 656, 669
Hin6I	GCGC	2 cut(s)	45, 503
HinP1I	GCGC	2 cut(s)	45, 503
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	3 cut(s)	232, 322, 372
Hpy188III	TCNNGA	2 cut(s)	127, 653
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	237, 282, 324, 344
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	102, 238
HpyCH4V	TGCA	5 cut(s)	95, 265, 448, 574, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	571, 633
HpyF3I	CTNAG	4 cut(s)	113, 193, 391, 600
HpySE526I	ACGT	2 cut(s)	102, 238
Hsp92II	CATG	5 cut(s)	81, 488, 519, 656, 669
HspAI	GCGC	2 cut(s)	45, 503
Ksp22I	TGATCA	2 cut(s)	285, 487
Kzo9I	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
LpnPI	CCDG	5 cut(s)	41, 81, 574, 593, 657
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	2 cut(s)	442, 497
MaeI	CTAG	2 cut(s)	255, 456
MaeII	ACGT	2 cut(s)	102, 238
MalI	GATC	6 cut(s)	72, 131, 221, 287, 489, 614
MboI	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
MboII	GAAGA	3 cut(s)	194, 257, 475
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	4 cut(s)	309, 357, 363, 656
MnlI	CCTC	2 cut(s)	340, 660
MseI	TTAA	5 cut(s)	177, 420, 438, 546, 673
MslI	CAYNNNNRTG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	629
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	571, 633
NdeII	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
NlaIII	CATG	5 cut(s)	81, 488, 519, 656, 669
NspI	RCATGY	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	361
PagI	TCATGA	1 cut(s)	652
PciI	ACATGT	1 cut(s)	515
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	336, 502
Ppu21I	YACGTR	1 cut(s)	239
PscI	ACATGT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	2 cut(s)	483, 648
RsaNI	GTAC	2 cut(s)	482, 647
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	5 cut(s)	177, 420, 438, 546, 673
SatI	GCNGC	2 cut(s)	335, 501
Sau3AI	GATC	6 cut(s)	70, 129, 219, 285, 487, 612
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	9 cut(s)	105, 126, 237, 241, 355, 502, 546, 556, 652
SfaNI	GCATC	2 cut(s)	442, 497
SfuI	TTCGAA	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SnaBI	TACGTA	1 cut(s)	239
Sse9I	AATT	4 cut(s)	309, 357, 363, 656
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	2 cut(s)	255, 456
SstI	GAGCTC	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	2 cut(s)	105, 241
TaqI	TCGA	4 cut(s)	73, 345, 361, 559
TasI	AATT	4 cut(s)	309, 357, 363, 656
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	5 cut(s)	177, 420, 438, 546, 673
Tru9I	TTAA	5 cut(s)	177, 420, 438, 546, 673
TscAI	CASTG	3 cut(s)	117, 336, 593
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	258, 306, 572, 669
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	3 cut(s)	117, 336, 593
XapI	RAATTY	2 cut(s)	309, 656
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	2 cut(s)	255, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.