Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

3151006 .. 3151918

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG039700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACATTGCCCACCTTCCGTCTTTACTATTCATGCAGTGCGGATTGCAATCGTATAGTGTGCAGCTCTGTTGATACCAGCTCAGCCCAGATTCCACAAAGTGATGATGATGCGCTTGAGATCAAATTTTCAGTGTACAAGGAAACCAAACACACTTTTACACCAGAGAGATACACTCAAGAAATTTGGACGATCCCCTACACAACAAAGGTCATTTCAGTCCGTCCTTCCGAGTTCTACAACCTCGATTCTACTAGTATTATGCAATCTTCTTCAGGGCTTATGATCGTAAACTTTATTAATACTCATTTTCCTCCTGAAGACAAAATACATCTCCCCAAAATTGTGGCAGCAATAACTGATCTTGTTCAAAAATTCATTCCCTTGGTTCCTAATGGTTTCATTCATGTGCAACGAATTGAAGGGGTTGAAATTGTGCATCATGTTGATGATGAAGTGACTAAAGCGAAAATACATAATCATTTTGAAGCAACGAAACGGGGGACGTGTGCTATTTGTTTGGATGACTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCACGTTTTTCACGGACCTTGCATTGTTGAGTGGCTGGATATCGATCATCATTGTCCCCTTTGCCGATATCCTCTGGCCCCTGAACTAGCACCATGGTTTAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

224

Amino Acids

25.52

Weight (kDa)

5.8

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	169 - 211	4.1e-14	Ring finger domain
zf-RING_11	PF17123	170 - 197	1.8e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	170 - 210	3.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	170 - 210	5.4e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	3 cut(s)	125, 183, 374
AcuI	CTGAAG	2 cut(s)	258, 339
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	4 cut(s)	371, 422, 431, 488
AhlI	ACTAGT	2 cut(s)	254, 548
AjiI	CACGTC	1 cut(s)	507
AluBI	AGCT	2 cut(s)	66, 81
AluI	AGCT	2 cut(s)	66, 81
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	63, 350
ApoI	RAATTY	3 cut(s)	125, 183, 374
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	581, 643
AvaII	GGWCC	1 cut(s)	581
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	75, 362
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BcuI	ACTAGT	2 cut(s)	254, 548
BfaI	CTAG	3 cut(s)	255, 549, 653
BisI	GCNGC	2 cut(s)	64, 351
BlpI	GCTNAGC	1 cut(s)	82
BlsI	GCNGC	2 cut(s)	65, 352
Bme18I	GGWCC	1 cut(s)	581
BmgBI	CACGTC	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	581, 643
BmiI	GGNNCC	2 cut(s)	390, 645
BmsI	GCATC	2 cut(s)	100, 448
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu1102I	GCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	137, 162
Bsa29I	ATCGAT	1 cut(s)	609
BsaBI	GATNNNNATC	2 cut(s)	48, 609
BsaJI	CCNNGG	2 cut(s)	384, 659
Bse3DI	GCAATG	1 cut(s)	5
Bse8I	GATNNNNATC	2 cut(s)	48, 609
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	384, 659
BseGI	GGATG	1 cut(s)	529
BseJI	GATNNNNATC	2 cut(s)	48, 609
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	75, 362
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	644
BshVI	ATCGAT	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	517, 606
BsmFI	GGGAC	2 cut(s)	517, 606
BsnI	GGCC	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	120, 192, 285, 361, 610
Bsp1720I	GCTNAGC	1 cut(s)	82
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	609
BspLI	GGNNCC	2 cut(s)	390, 645
BspPI	GGATC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	384, 659
BssMI	GATC	5 cut(s)	120, 192, 285, 361, 610
BssT1I	CCWWGG	2 cut(s)	384, 659
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	123, 195, 288, 364, 613
BstMBI	GATC	5 cut(s)	120, 192, 285, 361, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	75, 362
BstV2I	GAAGAC	1 cut(s)	327
BstXI	CCANNNNNNTGG	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	644
BsuTUI	ATCGAT	1 cut(s)	609
BtgI	CCRYGG	1 cut(s)	659
BtrI	CACGTC	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 138
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	581, 643
ClaI	ATCGAT	1 cut(s)	609
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	33, 407, 443, 660
CviJI	RGCY	6 cut(s)	66, 81, 86, 280, 601, 644
CviKI_1	RGCY	6 cut(s)	66, 81, 86, 280, 601, 644
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	5 cut(s)	122, 194, 287, 363, 612
DpnII	GATC	5 cut(s)	120, 192, 285, 361, 610
DraIII	CACNNNGTG	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	384, 659
Eco32I	GATATC	2 cut(s)	607, 635
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	258, 339
EcoRV	GATATC	2 cut(s)	607, 635
EcoT14I	CCWWGG	2 cut(s)	384, 659
ErhI	CCWWGG	2 cut(s)	384, 659
FaeI	CATG	4 cut(s)	36, 410, 446, 663
FaiI	YATR	9 cut(s)	34, 56, 263, 284, 408, 444, 477, 661, 673
FaqI	GGGAC	2 cut(s)	517, 606
FatI	CATG	4 cut(s)	32, 406, 442, 659
Fnu4HI	GCNGC	2 cut(s)	64, 351
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	64, 351
FspBI	CTAG	3 cut(s)	255, 549, 653
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	64, 351
HaeIII	GGCC	1 cut(s)	644
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	36, 410, 446, 663
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	91, 248
Hpy166II	GTNNAC	2 cut(s)	136, 292
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	179, 317
Hpy8I	GTNNAC	2 cut(s)	136, 292
HpyAV	CCTTC	3 cut(s)	25, 237, 416
HpyCH4IV	ACGT	3 cut(s)	506, 541, 570
HpyCH4V	TGCA	9 cut(s)	36, 48, 63, 265, 412, 439, 568, 588, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	565
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	3 cut(s)	506, 541, 570
Hsp92II	CATG	4 cut(s)	36, 410, 446, 663
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	5 cut(s)	120, 192, 285, 361, 610
LpnPI	CCDG	8 cut(s)	91, 101, 177, 261, 330, 587, 626, 660
Lsp1109I	GCAGC	2 cut(s)	75, 362
LweI	GCATC	2 cut(s)	100, 448
MaeI	CTAG	3 cut(s)	255, 549, 653
MaeII	ACGT	3 cut(s)	506, 541, 570
MaeIII	GTNAC	2 cut(s)	457, 542
MalI	GATC	5 cut(s)	122, 194, 287, 363, 612
MboI	GATC	5 cut(s)	120, 192, 285, 361, 610
MboII	GAAGA	3 cut(s)	261, 264, 332
MluCI	AATT	6 cut(s)	125, 183, 342, 374, 417, 432
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	4 cut(s)	254, 324, 526, 648
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	407, 447
MwoI	GCNNNNNNNGC	1 cut(s)	565
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	5 cut(s)	120, 192, 285, 361, 610
NlaIII	CATG	4 cut(s)	36, 410, 446, 663
NlaIV	GGNNCC	2 cut(s)	390, 645
NmuCI	GTSAC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	91, 248
PkrI	GCNGC	2 cut(s)	65, 352
PshBI	ATTAAT	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	390, 645
PspPI	GGNCC	2 cut(s)	581, 643
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	407, 447
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	64, 351
Sau3AI	GATC	5 cut(s)	120, 192, 285, 361, 610
Sau96I	GGNCC	2 cut(s)	581, 643
SfaNI	GCATC	2 cut(s)	100, 448
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	407, 447
SmlI	CTYRAG	2 cut(s)	116, 177
SmoI	CTYRAG	2 cut(s)	116, 177
SpeI	ACTAGT	2 cut(s)	254, 548
Sse9I	AATT	6 cut(s)	125, 183, 342, 374, 417, 432
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	3 cut(s)	255, 549, 653
StyI	CCWWGG	2 cut(s)	384, 659
TaiI	ACGT	3 cut(s)	509, 544, 573
TaqI	TCGA	3 cut(s)	246, 553, 609
TasI	AATT	6 cut(s)	125, 183, 342, 374, 417, 432
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	2 cut(s)	91, 248
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	43, 138
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	63, 350
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	21, 367, 391, 395, 468
TspGWI	ACGGA	3 cut(s)	8, 212, 594
TspRI	CASTG	2 cut(s)	43, 138
VpaK11BI	GGWCC	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	3 cut(s)	125, 183, 374
XspI	CTAG	3 cut(s)	255, 549, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.