Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004805.1

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

258287 .. 259003

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004805.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgtcgagtaggtcagatcataccccatcgttcaagacaacgcatcaagtgctctctactcgtagaatctcaatagtatggaggactataccatgcagttctgttgatagctctgttaagattccaccaagtgatgacgaacttcagattcgatttaaattcaccaaacaaaacgaacacgcttttggattagatattgaagacagtgaagttcttgaaagtttttatctccctcaaagtgaaaaggtcattaccatccatccttccgagttatgtggcgaggatactacaagcattatgcaatctgattcagttcgcttgattgtggactttgttaacaccaatttccctccattagataaagaaaaaatgcttcctattatcgtggacaaaataatcaagttagttcgtgactcgatcggctcatttcccttacctcctaatggtgtgattgttgtgcaccgacgtgatgtggttatcaccttgcattatattgacgattaccttaaggaaatgggcataagacgtcattttagaaatacaaaacgtgggacatgttctgtttgtatggataactacgaagttggacttaatgctagtcgattgccttgcttgcatgtttttcatggagcctgcattgtccagtggttggtgagaaatcctagttgccccctttgccggaatcgtatatcagctaaaacggcaacatggtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

238

Amino Acids

27.2

Weight (kDa)

8.11

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	526
AdeI	CACNNNGTG	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	443, 649, 678
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	34, 200, 218
AjiI	CACGTC	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	2 cut(s)	111, 695
AluI	AGCT	2 cut(s)	111, 695
Alw21I	GWGCWC	2 cut(s)	54, 462
Alw44I	GTGCAC	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	154, 472, 664
BaeGI	GKGCMC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	54, 462
BccI	CCATC	3 cut(s)	34, 263, 267
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BciVI	GTATCC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	597, 663
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	631
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 649, 678
Bse1I	ACTGG	1 cut(s)	643
BseGI	GGATG	2 cut(s)	255, 259
BseLI	CCNNNNNNNGG	3 cut(s)	443, 649, 678
BseNI	ACTGG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	54, 462
BsiSI	CCGG	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	443, 649, 678
BsmFI	GGGAC	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	54, 462
Bsp143I	GATC	2 cut(s)	16, 417
BspLI	GGNNCC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	643
BssMI	GATC	2 cut(s)	16, 417
BssNI	GRCGYC	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	526
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	614, 634
BstF5I	GGATG	2 cut(s)	255, 259
BstKTI	GATC	2 cut(s)	19, 420
BstMBI	GATC	2 cut(s)	16, 417
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 613, 675, 701
BstNSI	RCATGY	2 cut(s)	558, 620
BstSLI	GKGCMC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	255, 259
BtsIMutI	CAGTG	2 cut(s)	211, 650
Cac8I	GCNNGC	2 cut(s)	614, 634
CviAII	CATG	5 cut(s)	93, 555, 617, 626, 708
CviJI	RGCY	4 cut(s)	111, 423, 632, 695
CviKI_1	RGCY	4 cut(s)	111, 423, 632, 695
DpnI	GATC	2 cut(s)	18, 419
DpnII	GATC	2 cut(s)	16, 417
DraI	TTTAAA	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	128
FaeI	CATG	5 cut(s)	96, 558, 620, 629, 711
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	5 cut(s)	92, 554, 616, 625, 707
FokI	GGATG	2 cut(s)	242, 246
FspBI	CTAG	2 cut(s)	597, 663
HapII	CCGG	1 cut(s)	679
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	5 cut(s)	96, 558, 620, 629, 711
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	6 cut(s)	66, 121, 148, 308, 413, 682
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	679
HphI	GGTGA	3 cut(s)	154, 472, 664
Hpy166II	GTNNAC	4 cut(s)	328, 337, 388, 460
Hpy188I	TCNGA	4 cut(s)	16, 147, 268, 307
Hpy188III	TCNNGA	3 cut(s)	34, 215, 410
Hpy8I	GTNNAC	4 cut(s)	328, 337, 388, 460
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	3 cut(s)	466, 526, 547
HpyCH4V	TGCA	6 cut(s)	96, 301, 460, 487, 616, 636
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 613, 675, 701
HpySE526I	ACGT	3 cut(s)	466, 526, 547
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	5 cut(s)	96, 558, 620, 629, 711
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	16, 417
LmnI	GCTCC	1 cut(s)	629
LpnPI	CCDG	3 cut(s)	646, 656, 692
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	597, 663
MaeII	ACGT	3 cut(s)	466, 526, 547
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	18, 419
MboI	GATC	2 cut(s)	16, 417
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	54, 462
MluCI	AATT	2 cut(s)	158, 343
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	5 cut(s)	75, 243, 274, 360, 447
MseI	TTAA	6 cut(s)	117, 156, 336, 507, 591, 715
MslI	CAYNNNNRTG	1 cut(s)	465
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	49, 613, 675, 701
NdeII	GATC	2 cut(s)	16, 417
NlaIII	CATG	5 cut(s)	96, 558, 620, 629, 711
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	2 cut(s)	558, 620
OliI	CACNNNNGTG	1 cut(s)	465
PciI	ACATGT	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	66, 121, 148, 308, 682
PflMI	CCANNNNNTGG	1 cut(s)	649
Ple19I	CGATCG	1 cut(s)	420
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PscI	ACATGT	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	631
PvuI	CGATCG	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	6 cut(s)	117, 156, 336, 507, 591, 715
Sau3AI	GATC	2 cut(s)	16, 417
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	54, 462
SfaNI	GCATC	1 cut(s)	52
SmiI	ATTTAAAT	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	158, 343
SspMI	CTAG	2 cut(s)	597, 663
SwaI	ATTTAAAT	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	3 cut(s)	469, 529, 550
TaqI	TCGA	4 cut(s)	5, 151, 416, 601
TasI	AATT	2 cut(s)	158, 343
TfiI	GAWTC	5 cut(s)	66, 121, 148, 308, 682
Tru1I	TTAA	6 cut(s)	117, 156, 336, 507, 591, 715
Tru9I	TTAA	6 cut(s)	117, 156, 336, 507, 591, 715
TscAI	CASTG	2 cut(s)	211, 650
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	2 cut(s)	211, 650
Van91I	CCANNNNNTGG	1 cut(s)	649
Vha464I	CTTAAG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	558, 620
XspI	CTAG	2 cut(s)	597, 663
ZraI	GACGTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.