Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

61205239 .. 61205817

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGATGGTCTAATGTACAATGCAGCTCTGTCGATAAGTGGGCCGAGATTCCACAGAGCGATGACGTGCTTAAGATGAGATTTATATTTTGCCAGGCAGCCCAACATGCTTTTGGAACATGTGGAAATGTCCATGAAGGATTTGAAATCGTTCAAACTGAAAAGTTCATCACCATCCATCCTTCTGAGTTATGTAACGGGGATACCAATGCTATTAAGCTATCTCATTCCATACGTAAGATCGAGGACTTTATTAATACTGAGCTTCCTCCATTACAAAGAGAAAAAAAGCGGTCTCATATTGTGGATCAGGCAATTGAATTAGTTCAGAACTCTATCGGCTCTCCTCTACCTCCTAATTATTATATTGATGTTCATTTATCTGACGGGCTTATGATTGTGCACGAAACTAGTGATAAGCTGGGAGAAAATAGAGTACTTGATTATATTGAAACCACGAGACATGGGACATGTGTTATTTGCATGGATGACTTCGACGTTGGACGTGATGCTAGTCGATTGCCTTGCTTGCACATTTTTCATCAAAATTGCATTGTTGATTGGCTGAAGAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

192

Amino Acids

21.84

Weight (kDa)

5.5

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	157 - 192	3e-11	Ring finger domain
zf-RING_11	PF17123	158 - 185	5.3e-09	RING-like zinc finger
zf-RING_UBOX	PF13445	158 - 189	7.9e-07	RING-type zinc-finger
zf-C3HC4_2	PF13923	158 - 191	6.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	18, 438
AflII	CTTAAG	1 cut(s)	71
AflIII	ACRYGT	2 cut(s)	119, 470
AgsI	TTSAA	4 cut(s)	146, 155, 320, 452
AhlI	ACTAGT	1 cut(s)	410
AjiI	CACGTC	2 cut(s)	67, 506
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	4 cut(s)	27, 220, 265, 421
AluI	AGCT	4 cut(s)	27, 220, 265, 421
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	300, 454
Alw44I	GTGCAC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	24, 98
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	2 cut(s)	150, 324
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	36, 110
BccI	CCATC	2 cut(s)	182, 186
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 507, 541
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	300, 454
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	2 cut(s)	411, 513
BfrI	CTTAAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	25, 99
BlsI	GCNGC	2 cut(s)	26, 100
BmcAI	AGTACT	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	95
BmgBI	CACGTC	2 cut(s)	67, 506
BmgT120I	GGNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	4 cut(s)	11, 174, 178, 493
BseMII	CTCAG	2 cut(s)	177, 252
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	36, 110
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	300, 454
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	240, 307
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	178, 253
BspPI	GGATC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	16
BssMI	GATC	2 cut(s)	240, 307
BssSI	CACGAG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	186, 261
BstF5I	GGATG	4 cut(s)	11, 174, 178, 493
BstKTI	GATC	2 cut(s)	243, 310
BstMAI	GTCTC	2 cut(s)	300, 454
BstMBI	GATC	2 cut(s)	240, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 529
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	3 cut(s)	110, 123, 474
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	405
BstSNI	TACGTA	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	36, 110
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	2 cut(s)	67, 506
BtsCI	GGATG	4 cut(s)	11, 174, 178, 493
Cac8I	GCNNGC	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	17, 437
CviAII	CATG	6 cut(s)	107, 120, 134, 464, 471, 484
CviJI	RGCY	9 cut(s)	27, 44, 101, 220, 265, 342, 391, 421, 565
CviKI_1	RGCY	9 cut(s)	27, 44, 101, 220, 265, 342, 391, 421, 565
CviQI	GTAC	2 cut(s)	17, 437
DdeI	CTNAG	2 cut(s)	186, 261
DpnI	GATC	2 cut(s)	242, 309
DpnII	GATC	2 cut(s)	240, 307
Eco105I	TACGTA	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	6 cut(s)	110, 123, 137, 467, 474, 487
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	6 cut(s)	106, 119, 133, 463, 470, 483
Fnu4HI	GCNGC	2 cut(s)	25, 99
FokI	GGATG	4 cut(s)	18, 161, 165, 500
Fsp4HI	GCNGC	2 cut(s)	25, 99
FspBI	CTAG	2 cut(s)	411, 513
GluI	GCNGC	2 cut(s)	25, 99
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	110, 123, 137, 467, 474, 487
HinfI	GANTC	1 cut(s)	49
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	187, 330, 385
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	131, 192
HpyCH4IV	ACGT	4 cut(s)	66, 235, 498, 505
HpyCH4V	TGCA	5 cut(s)	24, 403, 483, 532, 552
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 529
HpyF3I	CTNAG	2 cut(s)	186, 261
HpySE526I	ACGT	4 cut(s)	66, 235, 498, 505
Hsp92II	CATG	6 cut(s)	110, 123, 137, 467, 474, 487
Kzo9I	GATC	2 cut(s)	240, 307
LpnPI	CCDG	4 cut(s)	80, 107, 296, 407
Lsp1109I	GCAGC	2 cut(s)	36, 110
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	411, 513
MaeII	ACGT	4 cut(s)	66, 235, 498, 505
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	242, 309
MboI	GATC	2 cut(s)	240, 307
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	4 cut(s)	315, 320, 358, 547
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	4 cut(s)	238, 279, 357, 363
MroXI	GAANNNNTTC	2 cut(s)	150, 324
MseI	TTAA	3 cut(s)	72, 216, 255
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	107, 529
NdeII	GATC	2 cut(s)	240, 307
NlaIII	CATG	6 cut(s)	110, 123, 137, 467, 474, 487
NmeAIII	GCCGAG	1 cut(s)	70
NspI	RCATGY	3 cut(s)	110, 123, 474
PciI	ACATGT	2 cut(s)	119, 470
PdmI	GAANNNNTTC	2 cut(s)	150, 324
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	26, 100
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	2 cut(s)	119, 470
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	42
RsaI	GTAC	2 cut(s)	18, 438
RsaNI	GTAC	2 cut(s)	17, 437
SaqAI	TTAA	3 cut(s)	72, 216, 255
SatI	GCNGC	2 cut(s)	25, 99
Sau3AI	GATC	2 cut(s)	240, 307
Sau96I	GGNCC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	9 cut(s)	29, 69, 222, 238, 267, 355, 423, 501, 508
SfaNI	GCATC	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SnaBI	TACGTA	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	4 cut(s)	315, 320, 358, 547
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	411, 513
StyD4I	CCNGG	1 cut(s)	93
TaiI	ACGT	4 cut(s)	69, 238, 501, 508
TaqI	TCGA	4 cut(s)	33, 243, 495, 517
TasI	AATT	4 cut(s)	315, 320, 358, 547
TatI	WGTACW	2 cut(s)	16, 436
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	72, 216, 255
Tru9I	TTAA	3 cut(s)	72, 216, 255
TseI	GCWGC	2 cut(s)	24, 98
TspDTI	ATGAA	4 cut(s)	150, 157, 365, 530
Vha464I	CTTAAG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	255
XceI	RCATGY	3 cut(s)	110, 123, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	2 cut(s)	150, 324
XspI	CTAG	2 cut(s)	411, 513
ZrmI	AGTACT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.