Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

10316746 .. 10317333

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG088000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGCTCGCTCTACATCAATGCTTACGATGACTGCACTGTGAATTGGAATAGTGTACCGTGCAGTTCTGTTGATACCACGTCCCAGGTTCCACCAAGCGATGATGATGCGCTTAGCATCCAATTTATGTTGTACAAGGAAACCAAACACACTCTTGCACCAGATAGTTGTACTCAAGAAATTTGGATGATCCCCAACACAACAGAGGTCATTACAGTCCGTCCTTCCGAGTTATGCAACCACGACTCTACTACTATTATGCAATCTTCTTCAGGGCGTATGATTGTGGACTTTACTGACACCCATTTTCCTCCTCAACACAAAATACATGTCCCCAAAGTTGTGGAGAAAATAATTGATCTTGTTCAGAGCTCCATTCCCTTGGTTCCTAATGATTTCATTGATGTGCAACGAATTGAAGGGATTGAAATTTTGCGCCATCCTTATAGTGAAGCCGCTAAAGCCTACATACGTAATTGTTTTCAAGCTACGAAACGTGGGACATGTGCTATTTGTATGGATGGCTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCTTTCATGGACCTTGCATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

195

Amino Acids

21.94

Weight (kDa)

5.24

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	2 cut(s)	180, 429
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	3 cut(s)	57, 134, 172
AflIII	ACRYGT	2 cut(s)	328, 503
AgsI	TTSAA	3 cut(s)	419, 428, 485
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	372, 488
AluI	AGCT	2 cut(s)	372, 488
Alw21I	GWGCWC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	180, 429
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	2 cut(s)	112, 438
AspS9I	GGNCC	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	573
BanII	GRGCYC	2 cut(s)	8, 374
Bbv12I	GWGCWC	1 cut(s)	374
BccI	CCATC	2 cut(s)	447, 515
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 540, 574
BciT130I	CCWGG	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	456
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	573
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	90, 387
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	2 cut(s)	97, 126
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	84, 381
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	84, 381
BseGI	GGATG	4 cut(s)	117, 192, 439, 526
BseRI	GAGGAG	1 cut(s)	303
BsgI	GTGCAG	2 cut(s)	19, 82
BsiHKAI	GWGCWC	1 cut(s)	374
BslFI	GGGAC	3 cut(s)	67, 317, 514
BsmFI	GGGAC	3 cut(s)	67, 317, 514
Bsp1286I	GDGCHC	2 cut(s)	8, 374
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	189, 358
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	90, 387
BspPI	GGATC	1 cut(s)	184
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	84, 381
BssMI	GATC	2 cut(s)	189, 358
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	40, 60, 217
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	8, 563
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	117, 192, 439, 526
BstHHI	GCGC	2 cut(s)	112, 438
BstKTI	GATC	2 cut(s)	192, 361
BstMBI	GATC	2 cut(s)	189, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 562
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	332, 507
BstSCI	CCNGG	1 cut(s)	84
BstSNI	TACGTA	1 cut(s)	473
BstXI	CCANNNNNNTGG	2 cut(s)	343, 382
BtgZI	GCGATG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	4 cut(s)	117, 192, 439, 526
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	8, 563
CfoI	GCGC	2 cut(s)	112, 438
Cfr13I	GGNCC	1 cut(s)	573
Csp6I	GTAC	3 cut(s)	56, 133, 171
CviAII	CATG	3 cut(s)	329, 504, 570
CviJI	RGCY	6 cut(s)	6, 372, 455, 464, 488, 525
CviKI_1	RGCY	6 cut(s)	6, 372, 455, 464, 488, 525
CviQI	GTAC	3 cut(s)	56, 133, 171
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	191, 360
DpnII	GATC	2 cut(s)	189, 358
Ecl136II	GAGCTC	1 cut(s)	372
Eco105I	TACGTA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	8, 374
Eco47I	GGWCC	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	2 cut(s)	8, 374
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	332, 507, 573
FaqI	GGGAC	3 cut(s)	67, 317, 514
FatI	CATG	3 cut(s)	328, 503, 569
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	4 cut(s)	104, 199, 426, 533
FriOI	GRGCYC	2 cut(s)	8, 374
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	111, 437
GluI	GCNGC	1 cut(s)	456
HhaI	GCGC	2 cut(s)	112, 438
Hin1II	CATG	3 cut(s)	332, 507, 573
Hin6I	GCGC	2 cut(s)	110, 436
HinP1I	GCGC	2 cut(s)	110, 436
HinfI	GANTC	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	56, 289
Hpy188I	TCNGA	2 cut(s)	229, 369
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	56, 289
HpyAV	CCTTC	2 cut(s)	234, 413
HpyCH4III	ACNGT	3 cut(s)	40, 60, 217
HpyCH4IV	ACGT	4 cut(s)	80, 472, 496, 538
HpyCH4V	TGCA	7 cut(s)	36, 63, 158, 237, 262, 409, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 562
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	4 cut(s)	80, 472, 496, 538
Hsp92II	CATG	3 cut(s)	332, 507, 573
HspAI	GCGC	2 cut(s)	110, 436
Kzo9I	GATC	2 cut(s)	189, 358
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	4 cut(s)	71, 98, 174, 258
LweI	GCATC	2 cut(s)	97, 126
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	4 cut(s)	80, 472, 496, 538
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	2 cut(s)	191, 360
MboI	GATC	2 cut(s)	189, 358
MboII	GAAGA	2 cut(s)	258, 261
MhlI	GDGCHC	2 cut(s)	8, 374
MluCI	AATT	7 cut(s)	43, 122, 180, 354, 414, 429, 475
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	199, 321, 324, 523
MseI	TTAA	1 cut(s)	586
MslI	CAYNNNNRTG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	461, 562
NdeII	GATC	2 cut(s)	189, 358
NlaIII	CATG	3 cut(s)	332, 507, 573
NlaIV	GGNNCC	2 cut(s)	90, 387
NspI	RCATGY	2 cut(s)	332, 507
PciI	ACATGT	2 cut(s)	328, 503
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	2 cut(s)	328, 503
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	90, 387
PspPI	GGNCC	1 cut(s)	573
RsaI	GTAC	3 cut(s)	57, 134, 172
RsaNI	GTAC	3 cut(s)	56, 133, 171
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	189, 358
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	8, 374
SfaNI	GCATC	2 cut(s)	97, 126
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	545
Sse9I	AATT	7 cut(s)	43, 122, 180, 354, 414, 429, 475
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	40, 60, 217
TaiI	ACGT	4 cut(s)	83, 475, 499, 541
TaqI	TCGA	1 cut(s)	550
TasI	AATT	7 cut(s)	43, 122, 180, 354, 414, 429, 475
TatI	WGTACW	2 cut(s)	132, 170
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	388, 558
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	180, 429
XceI	RCATGY	2 cut(s)	332, 507
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.