Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

87076883 .. 87079930

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGACAGAGATACTTAATCAGGTTGAAGGGCTTGTATTCTGTGGAGAATTTTGGCGATATAAAAGTATTGGAACCAAATATGAACACGGGCTGGAAGAAACCAGAATAAGGTCTAGGTTTTCTGTCACCTCTGCCGATATGTGTGCTAAGAATCCACCAAGCGATGATACACTAAAGATCCGATTTATCTTCTTCAAGCATACCTGTCATGGTTTGGGAACACGTGTAGATATTCGTGAAAATTTTCATATCCCTCAAAGTGAAAAGTTCATCACGATTCCTCCTTCTGAGTATTGTAATAAGGATCATACTAGAATTATGCAATCTTCTTCAATACGTATGCTCGTGGACTTTATTAAGACTGAGTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

125

Amino Acids

14.66

Weight (kDa)

8.38

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	175, 315
AcsI	RAATTY	2 cut(s)	50, 244
AcvI	CACGTG	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	111
AflIII	ACRYGT	2 cut(s)	224, 226
AgsI	TTSAA	3 cut(s)	29, 199, 336
AlwI	GGATC	2 cut(s)	175, 315
ApoI	RAATTY	2 cut(s)	50, 244
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	121
BauI	CACGAG	1 cut(s)	347
BbrPI	CACGTG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BfaI	CTAG	2 cut(s)	117, 315
BmiI	GGNNCC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	11
BsaAI	YACGTR	2 cut(s)	227, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	282, 357
BslI	CCNNNNNNNGG	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	180, 307
BspCNI	CTCAG	2 cut(s)	283, 358
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	175, 315
BssMI	GATC	2 cut(s)	180, 307
BssSI	CACGAG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	227, 341
BstDEI	CTNAG	3 cut(s)	150, 291, 366
BstKTI	GATC	2 cut(s)	183, 310
BstMBI	GATC	2 cut(s)	180, 307
BstSNI	TACGTA	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	180
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	2 cut(s)	34, 94
CviKI_1	RGCY	2 cut(s)	34, 94
DdeI	CTNAG	3 cut(s)	150, 291, 366
DpnI	GATC	2 cut(s)	182, 309
DpnII	GATC	2 cut(s)	180, 307
Eco105I	TACGTA	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	227
FaeI	CATG	1 cut(s)	215
FaiI	YATR	9 cut(s)	63, 84, 143, 204, 213, 252, 312, 323, 344
FatI	CATG	1 cut(s)	211
FspBI	CTAG	2 cut(s)	117, 315
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	154, 280
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	185, 292
Hpy188III	TCNNGA	2 cut(s)	239, 277
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	23, 297
HpyCH4IV	ACGT	2 cut(s)	226, 340
HpyCH4V	TGCA	2 cut(s)	325, 373
HpyF3I	CTNAG	3 cut(s)	150, 291, 366
HpySE526I	ACGT	2 cut(s)	226, 340
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	180, 307
LpnPI	CCDG	4 cut(s)	8, 80, 118, 220
MaeI	CTAG	2 cut(s)	117, 315
MaeII	ACGT	2 cut(s)	226, 340
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	182, 309
MboI	GATC	2 cut(s)	180, 307
MboII	GAAGA	6 cut(s)	16, 110, 184, 187, 321, 324
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	3 cut(s)	50, 244, 318
MnlI	CCTC	3 cut(s)	142, 267, 294
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	2 cut(s)	18, 360
NdeII	GATC	2 cut(s)	180, 307
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	154, 280
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
Ppu21I	YACGTR	2 cut(s)	227, 341
PspCI	CACGTG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	18, 360
Sau3AI	GATC	2 cut(s)	180, 307
SetI	ASST	7 cut(s)	27, 116, 122, 134, 209, 229, 343
SnaBI	TACGTA	1 cut(s)	341
Sse9I	AATT	3 cut(s)	50, 244, 318
SspMI	CTAG	2 cut(s)	117, 315
TaiI	ACGT	2 cut(s)	229, 343
TasI	AATT	3 cut(s)	50, 244, 318
TfiI	GAWTC	2 cut(s)	154, 280
Tru1I	TTAA	2 cut(s)	18, 360
Tru9I	TTAA	2 cut(s)	18, 360
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	17, 99, 239, 262
XapI	RAATTY	2 cut(s)	50, 244
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	117, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.