Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

1888985 .. 1892200

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAACATCCAGCCTTATTATGATGGCGCAATTGGATGGTGGATTAGTAATGAAGGGGCCGTGATGCCACTAACGGATGAGCTTATTATCCAATTTCTATTTTACAAGCAAACCATACATGAATTTGGTCCTATTAAAGAAGAATACAACTTCCTCCAGCGTGAAAGGGTCATTAAGATCACTCTTTCCGAGCTACGTACGGAGGATACTACTAGTATTATGCAATCTCCTTCAATGCGTAAGATCAAGCAGGTTATCGACATTGAATTTCCTTCATCAGAAACTGCTGTGCGGCTTGAAGTTGAGGAACGTATACTTCAAATTGTTCAGAACCCTGGGACACCCATCTTAGTGCCTCCCAACCATAGAATTTTCGTCAAAGCAATTGACGGGATAAAGATTTTGCATGATACTTGTGACAAGAATGCAAAACAGAGAATACATGATCATTTGGAAGCTACGAGACGCGCAACATGTGCTATATGTACAGACGACGTTAACCTTAGTAAACCTAGTCGATTGCCTTGCCTGCACTTGTTTCATCACTGTTGCATTATGCAGTGGCTGGAGATCAAGCAACAGTGTCCCACTTGCCGAAGCCCAGTACCTCTTGAATTTGTTACATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

211

Amino Acids

24.44

Weight (kDa)

6.24

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	158 - 199	6.6e-11	Ring finger domain
zf-C3HC4_2	PF13923	159 - 198	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	159 - 198	8.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	468
AciI	CCGC	1 cut(s)	292
AcsI	RAATTY	4 cut(s)	122, 266, 369, 614
AfaI	GTAC	3 cut(s)	199, 487, 606
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	234, 266, 299, 320, 614
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	82, 193, 458
AluI	AGCT	3 cut(s)	82, 193, 458
Alw26I	GTCTC	1 cut(s)	457
AlwNI	CAGNNNCTG	2 cut(s)	284, 565
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	4 cut(s)	122, 266, 369, 614
AspLEI	GCGC	2 cut(s)	29, 470
AspS9I	GGNCC	2 cut(s)	57, 128
AvaII	GGWCC	1 cut(s)	128
BccI	CCATC	3 cut(s)	17, 30, 353
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	1 cut(s)	336
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 513
BfuAI	ACCTGC	1 cut(s)	241
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	57, 128
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	596
BpmI	CTGGAG	2 cut(s)	140, 587
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	334, 335
Bse1I	ACTGG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	334, 335
BseGI	GGATG	3 cut(s)	6, 41, 82
BseNI	ACTGG	1 cut(s)	602
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	59
BsiWI	CGTACG	1 cut(s)	197
BslFI	GGGAC	2 cut(s)	352, 570
BsmAI	GTCTC	1 cut(s)	457
BsmBI	CGTCTC	1 cut(s)	457
BsmFI	GGGAC	2 cut(s)	352, 570
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	177, 243, 445, 570
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	485
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	334, 335
BssMI	GATC	4 cut(s)	177, 243, 445, 570
BssNAI	GTATAC	1 cut(s)	314
Bst1107I	GTATAC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	548, 582
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	349, 503
BstF5I	GGATG	3 cut(s)	6, 41, 82
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	29, 470
BstKTI	GATC	4 cut(s)	180, 246, 448, 573
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	4 cut(s)	177, 243, 445, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 529
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	334
BstSNI	TACGTA	1 cut(s)	197
BstUI	CGCG	1 cut(s)	468
BstZ17I	GTATAC	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	6, 41, 82
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	3 cut(s)	544, 566, 587
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	530
CaiI	CAGNNNCTG	2 cut(s)	284, 565
CfoI	GCGC	2 cut(s)	29, 470
Cfr13I	GGNCC	2 cut(s)	57, 128
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	198, 486, 605
CviAII	CATG	5 cut(s)	119, 407, 443, 474, 624
CviJI	RGCY	8 cut(s)	13, 59, 82, 193, 295, 458, 565, 600
CviKI_1	RGCY	8 cut(s)	13, 59, 82, 193, 295, 458, 565, 600
CviQI	GTAC	3 cut(s)	198, 486, 605
DdeI	CTNAG	2 cut(s)	349, 503
DpnI	GATC	4 cut(s)	179, 245, 447, 572
DpnII	GATC	4 cut(s)	177, 243, 445, 570
Eco105I	TACGTA	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	5 cut(s)	122, 410, 446, 477, 627
FaqI	GGGAC	2 cut(s)	352, 570
FatI	CATG	5 cut(s)	118, 406, 442, 473, 623
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	48, 89
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	213, 513
GlaI	GCGC	2 cut(s)	28, 469
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	2 cut(s)	140, 587
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	2 cut(s)	29, 470
Hin1II	CATG	5 cut(s)	122, 410, 446, 477, 627
Hin6I	GCGC	2 cut(s)	27, 468
HinP1I	GCGC	2 cut(s)	27, 468
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HpaI	GTTAAC	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	314, 499, 509
Hpy188I	TCNGA	3 cut(s)	190, 280, 330
Hpy188III	TCNNGA	1 cut(s)	611
Hpy8I	GTNNAC	3 cut(s)	314, 499, 509
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	3 cut(s)	47, 240, 282
HpyCH4III	ACNGT	2 cut(s)	548, 582
HpyCH4IV	ACGT	3 cut(s)	196, 310, 495
HpyCH4V	TGCA	6 cut(s)	223, 406, 428, 532, 552, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 529
HpyF3I	CTNAG	2 cut(s)	349, 503
HpySE526I	ACGT	3 cut(s)	196, 310, 495
Hsp92II	CATG	5 cut(s)	122, 410, 446, 477, 627
HspAI	GCGC	2 cut(s)	27, 468
Ksp22I	TGATCA	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	177, 243, 445, 570
LpnPI	CCDG	8 cut(s)	23, 170, 236, 321, 348, 542, 551, 615
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	213, 513
MaeII	ACGT	3 cut(s)	196, 310, 495
MaeIII	GTNAC	2 cut(s)	416, 619
MalI	GATC	4 cut(s)	179, 245, 447, 572
MboI	GATC	4 cut(s)	177, 243, 445, 570
MboII	GAAGA	1 cut(s)	152
MfeI	CAATTG	2 cut(s)	30, 384
MluCI	AATT	8 cut(s)	30, 92, 122, 266, 321, 369, 384, 614
MnlI	CCTC	5 cut(s)	164, 196, 298, 366, 618
MseI	TTAA	4 cut(s)	135, 174, 498, 631
MslI	CAYNNNNRTG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	2 cut(s)	30, 384
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	476, 529
NdeII	GATC	4 cut(s)	177, 243, 445, 570
NlaIII	CATG	5 cut(s)	122, 410, 446, 477, 627
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	477
PasI	CCCWGGG	1 cut(s)	335
PciI	ACATGT	1 cut(s)	473
PctI	GAATGC	1 cut(s)	430
Pfl23II	CGTACG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	294
Ppu21I	YACGTR	1 cut(s)	197
PscI	ACATGT	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspLI	CGTACG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	57, 128
PstNI	CAGNNNCTG	2 cut(s)	284, 565
RsaI	GTAC	3 cut(s)	199, 487, 606
RsaNI	GTAC	3 cut(s)	198, 486, 605
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	135, 174, 498, 631
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	4 cut(s)	177, 243, 445, 570
Sau96I	GGNCC	2 cut(s)	57, 128
ScrFI	CCNGG	1 cut(s)	336
SfaNI	GCATC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	350
SnaBI	TACGTA	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	8 cut(s)	30, 92, 122, 266, 321, 369, 384, 614
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	213, 513
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	548, 582
TaiI	ACGT	3 cut(s)	199, 313, 498
TaqI	TCGA	2 cut(s)	258, 517
TasI	AATT	8 cut(s)	30, 92, 122, 266, 321, 369, 384, 614
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	295
Tru1I	TTAA	4 cut(s)	135, 174, 498, 631
Tru9I	TTAA	4 cut(s)	135, 174, 498, 631
TscAI	CASTG	3 cut(s)	551, 566, 587
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	5 cut(s)	17, 66, 135, 264, 530
TspGWI	ACGGA	2 cut(s)	89, 215
TspRI	CASTG	3 cut(s)	551, 566, 587
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	4 cut(s)	122, 266, 369, 614
XceI	RCATGY	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	213, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.