Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

348266 .. 349026

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTCCGTTATTACAGAACCACAATGGGATGGTCTAATGTACAATGCAGCTCTGTCGATAAGTGGGCCGAGATTCCACAGAGCGATGACGTGCTTAAGATGAGATTTCTATTTTGCAAGGGAACCCAACATGCTTTTGGAACATGTGGAAATGTCTATGAAGGATTTGAAATCGTTCAAACTGAAAAGTTCATCACCATCCATCCTTCTGAGTTATGTAACGGGGATATCAATGCTATTGAGCAATCTCATTCCATACGTAAGATCGAGGACTTTATTAATACTGAGCTTCCTCCATTACAAAGAGAAAAAAAGCGGTCTCCTATTGTGGATCAGGCAATTGAATTAGTTCAGAACTCTATCGGCTCTCCTCTACCTCCTAATTATTATATTGATGTTCATTTATCTGACGGGCTTATGATTGTGCACGAAACTAGTGATAAGCTGGGAGAAAATAGAGTACTTGATTATATTGAAACCACGAGACATGGGACATGTGTTATTTGCATGGATGACTTCGACGTTGGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

177

Amino Acids

20.28

Weight (kDa)

5.07

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	339
AfaI	GTAC	2 cut(s)	42, 462
AflII	CTTAAG	1 cut(s)	95
AflIII	ACRYGT	2 cut(s)	143, 494
AgsI	TTSAA	4 cut(s)	170, 179, 344, 476
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	3 cut(s)	51, 289, 445
AluI	AGCT	3 cut(s)	51, 289, 445
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	324, 478
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	2 cut(s)	174, 348
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	3 cut(s)	24, 206, 210
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BcoDI	GTCTC	2 cut(s)	324, 478
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	462
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	324
BseGI	GGATG	4 cut(s)	35, 198, 202, 517
BseMII	CTCAG	2 cut(s)	201, 276
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	445
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	324, 478
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	264, 331
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	202, 277
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	40
BssMI	GATC	2 cut(s)	264, 331
BssSI	CACGAG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	531
BstAFI	CTTAAG	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	210, 285
BstF5I	GGATG	4 cut(s)	35, 198, 202, 517
BstKTI	GATC	2 cut(s)	267, 334
BstMAI	GTCTC	2 cut(s)	324, 478
BstMBI	GATC	2 cut(s)	264, 331
BstNSI	RCATGY	3 cut(s)	134, 147, 498
BstSLI	GKGCMC	1 cut(s)	429
BstSNI	TACGTA	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	35, 198, 202, 517
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	41, 461
CviAII	CATG	5 cut(s)	131, 144, 488, 495, 508
CviJI	RGCY	6 cut(s)	51, 68, 289, 366, 415, 445
CviKI_1	RGCY	6 cut(s)	51, 68, 289, 366, 415, 445
CviQI	GTAC	2 cut(s)	41, 461
DdeI	CTNAG	2 cut(s)	210, 285
DpnI	GATC	2 cut(s)	266, 333
DpnII	GATC	2 cut(s)	264, 331
Eco105I	TACGTA	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	229
FaeI	CATG	5 cut(s)	134, 147, 491, 498, 511
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	5 cut(s)	130, 143, 487, 494, 507
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	4 cut(s)	42, 185, 189, 524
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	134, 147, 491, 498, 511
HinfI	GANTC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	211, 354, 409
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	155, 216
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	3 cut(s)	90, 259, 522
HpyCH4V	TGCA	4 cut(s)	48, 117, 427, 507
HpyF3I	CTNAG	2 cut(s)	210, 285
HpySE526I	ACGT	3 cut(s)	90, 259, 522
Hsp92II	CATG	5 cut(s)	134, 147, 491, 498, 511
Kzo9I	GATC	2 cut(s)	264, 331
LpnPI	CCDG	2 cut(s)	320, 431
Lsp1109I	GCAGC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	3 cut(s)	90, 259, 522
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	266, 333
MboI	GATC	2 cut(s)	264, 331
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	3 cut(s)	339, 344, 382
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	4 cut(s)	262, 303, 381, 387
MroXI	GAANNNNTTC	2 cut(s)	174, 348
MseI	TTAA	2 cut(s)	96, 279
MspCI	CTTAAG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	339
NdeII	GATC	2 cut(s)	264, 331
NlaIII	CATG	5 cut(s)	134, 147, 491, 498, 511
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	94
NspI	RCATGY	3 cut(s)	134, 147, 498
PciI	ACATGT	2 cut(s)	143, 494
PdmI	GAANNNNTTC	2 cut(s)	174, 348
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	260
PscI	ACATGT	2 cut(s)	143, 494
PshBI	ATTAAT	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	42, 462
RsaNI	GTAC	2 cut(s)	41, 461
SaqAI	TTAA	2 cut(s)	96, 279
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	2 cut(s)	264, 331
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	462
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	7 cut(s)	53, 93, 262, 291, 379, 447, 525
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	3 cut(s)	339, 344, 382
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	3 cut(s)	93, 262, 525
TaqI	TCGA	3 cut(s)	57, 267, 519
TasI	AATT	3 cut(s)	339, 344, 382
TatI	WGTACW	2 cut(s)	40, 460
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	2 cut(s)	96, 279
Tru9I	TTAA	2 cut(s)	96, 279
TseI	GCWGC	1 cut(s)	48
TspDTI	ATGAA	3 cut(s)	174, 181, 389
Vha464I	CTTAAG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	3 cut(s)	134, 147, 498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	174, 348
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.