Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

38919398 .. 38921875

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCATCCCTCTGCATCACTGCTTACGATCGATGCAATGTGAAATGCATTAGTGTGCCGTGCAGCTCTGTTGATACCTCGGCCCAGATTCCACCAAGTGATGATGATGCGTTTAAGATCCAATTTATGTTGTACAAGGAAACCAAACACACTTTTGCACCAGATGGTGATACTCAAGAAATTTGGATGATCCCCAACACGACACAGGTCATTACAGTCCGTCCTTCCGAGCTATACAACCACGATTCTACTAGTATTATGCAATCTTCTTCAGGGCGTATGATCCTAGACTTTATTAACACCCATTTTCCTCCTCAAGACAAAATACTTCTCCCCAAAGTTGTGGCAAGAATAATTGATCTTGTTCAAAACTCCATTCCCTTGGCTCCAAATGGTTTCATTCATGTGCGACGAATTCAAGGGATTGAAATTTTGCATCGTCCTCGTAATGAAGCGACTAAAGCCTACATACATAATCGTTTTGAAGCTACGAAACGTGGGACATGTGCTATTTGTATGGATGGCTTTGAGTTCTTCAGCCAAGCCTTATTCAATAGATTGTGCATAACCACGCAAGCAGAGCTCAAAAGCATATCTGAGTATTCAGTAGTTGTAGACGGAAAACAGAACATGTTACACTTTGTCCCTATATGGAAGATACTCAGGGCTGCATTGGTGACTTGGCTAAGAAGTTTGGTTACAATGTACTCAATGAGGAAGCTATCTCCTTCTATGGTTTTGAACGAACAGAAGCAGAGGTACGCCAGATCACCTTTATTCATTTGTAAGAACTCCCATGAGATGCTCAATGTTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

273

Amino Acids

31.2

Weight (kDa)

9.0

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	615
AclWI	GGATC	3 cut(s)	112, 184, 277
AcsI	RAATTY	3 cut(s)	180, 414, 429
AcuI	CTGAAG	2 cut(s)	255, 520
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	3 cut(s)	134, 707, 761
AflIII	ACRYGT	2 cut(s)	503, 630
AgsI	TTSAA	6 cut(s)	368, 419, 428, 485, 553, 742
AhlI	ACTAGT	1 cut(s)	251
AluBI	AGCT	5 cut(s)	66, 232, 488, 583, 721
AluI	AGCT	5 cut(s)	66, 232, 488, 583, 721
Alw21I	GWGCWC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	112, 184, 277
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	63, 668
ApoI	RAATTY	3 cut(s)	180, 414, 429
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	179, 688, 762
BanII	GRGCYC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	4 cut(s)	682, 714, 743, 775
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	75, 655
BccI	CCATC	2 cut(s)	158, 515
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	2 cut(s)	252, 287
BisI	GCNGC	2 cut(s)	64, 669
BlsI	GCNGC	2 cut(s)	65, 670
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	6 cut(s)	14, 23, 24, 97, 445, 792
BoxI	GACNNNNGTC	1 cut(s)	206
BpuEI	CTTGAG	2 cut(s)	159, 300
Bsa29I	ATCGAT	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	78, 381
Bse3DI	GCAATG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	78, 381
BseGI	GGATG	3 cut(s)	5, 192, 526
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	588, 676
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	75, 655
BsgI	GTGCAG	1 cut(s)	82
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	2 cut(s)	514, 629
BsmFI	GGGAC	2 cut(s)	514, 629
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	589, 675
BspDI	ATCGAT	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	3 cut(s)	112, 184, 277
BsrDI	GCAATG	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	78, 381
BssMI	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	217
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	597, 662, 686
BstF5I	GGATG	3 cut(s)	5, 192, 526
BstKTI	GATC	6 cut(s)	31, 120, 192, 285, 361, 770
BstMBI	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 580
BstNSI	RCATGY	2 cut(s)	507, 634
BstPAI	GACNNNNGTC	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	75, 655
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	2 cut(s)	343, 382
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	5, 192, 526
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	133, 706, 760
CviAII	CATG	4 cut(s)	404, 504, 631, 797
CviQI	GTAC	3 cut(s)	133, 706, 760
DdeI	CTNAG	3 cut(s)	597, 662, 686
DpnI	GATC	6 cut(s)	30, 119, 191, 284, 360, 769
DpnII	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
DraIII	CACNNNGTG	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	2 cut(s)	255, 520
EcoICRI	GAGCTC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	407, 507, 634, 800
FaqI	GGGAC	2 cut(s)	514, 629
FatI	CATG	4 cut(s)	403, 503, 630, 796
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	64, 669
FokI	GGATG	2 cut(s)	199, 533
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	64, 669
FspBI	CTAG	2 cut(s)	252, 287
GluI	GCNGC	2 cut(s)	64, 669
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	407, 507, 634, 800
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	2 cut(s)	88, 245
HpaI	GTTAAC	1 cut(s)	814
HphI	GGTGA	3 cut(s)	179, 688, 762
Hpy166II	GTNNAC	2 cut(s)	616, 814
Hpy188I	TCNGA	2 cut(s)	229, 598
Hpy188III	TCNNGA	2 cut(s)	176, 317
Hpy8I	GTNNAC	2 cut(s)	616, 814
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	234, 738
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	9 cut(s)	15, 36, 48, 63, 158, 262, 436, 564, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 580
HpyF3I	CTNAG	3 cut(s)	597, 662, 686
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	407, 507, 634, 800
KspAI	GTTAAC	1 cut(s)	814
Kzo9I	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	6 cut(s)	98, 174, 191, 258, 649, 778
Lsp1109I	GCAGC	2 cut(s)	75, 655
LweI	GCATC	6 cut(s)	14, 23, 24, 97, 445, 792
MaeI	CTAG	2 cut(s)	252, 287
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	633, 676, 697
MalI	GATC	6 cut(s)	30, 119, 191, 284, 360, 769
MboI	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
MboII	GAAGA	4 cut(s)	258, 261, 526, 667
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	5 cut(s)	122, 180, 354, 414, 429
MnlI	CCTC	7 cut(s)	20, 88, 321, 324, 453, 708, 750
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	3 cut(s)	114, 297, 813
MslI	CAYNNNNRTG	2 cut(s)	53, 404
MwoI	GCNNNNNNNGC	2 cut(s)	461, 580
NdeII	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
NlaIII	CATG	4 cut(s)	407, 507, 634, 800
NlaIV	GGNNCC	1 cut(s)	387
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	2 cut(s)	507, 634
PciI	ACATGT	2 cut(s)	503, 630
PfeI	GAWTC	2 cut(s)	88, 245
PkrI	GCNGC	2 cut(s)	65, 670
Ple19I	CGATCG	1 cut(s)	31
PscI	ACATGT	2 cut(s)	503, 630
PshAI	GACNNNNGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	117
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	134, 707, 761
RsaNI	GTAC	3 cut(s)	133, 706, 760
RseI	CAYNNNNRTG	2 cut(s)	53, 404
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	3 cut(s)	114, 297, 813
SatI	GCNGC	2 cut(s)	64, 669
Sau3AI	GATC	6 cut(s)	28, 117, 189, 282, 358, 767
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	6 cut(s)	14, 23, 24, 97, 445, 792
SmiMI	CAYNNNNRTG	2 cut(s)	53, 404
SmlI	CTYRAG	2 cut(s)	174, 315
SmoI	CTYRAG	2 cut(s)	174, 315
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	5 cut(s)	122, 180, 354, 414, 429
SspMI	CTAG	2 cut(s)	252, 287
SstI	GAGCTC	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	31
TasI	AATT	5 cut(s)	122, 180, 354, 414, 429
TatI	WGTACW	2 cut(s)	132, 705
TfiI	GAWTC	2 cut(s)	88, 245
Tru1I	TTAA	3 cut(s)	114, 297, 813
Tru9I	TTAA	3 cut(s)	114, 297, 813
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	2 cut(s)	63, 668
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	4 cut(s)	388, 392, 465, 769
TspGWI	ACGGA	2 cut(s)	209, 633
TspRI	CASTG	1 cut(s)	25
XapI	RAATTY	3 cut(s)	180, 414, 429
XceI	RCATGY	2 cut(s)	507, 634
XmiI	GTMKAC	1 cut(s)	615
XspI	CTAG	2 cut(s)	252, 287
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.