Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

1464754 .. 1467303

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGTCAAGAAGTTCTGAATATTTGGTGCAAGCCCCAATCAGCAAAGCTTATTATGGTCCGTCGTTTCGAGTTATGTAACCAGGATGCTGCTACTGCTATGCAGTCTTTTTCAGTGTGTATGATTGTGGACGTTATTAACACCCATTTTCCTCTATTAGACAAAAACTTTGTGCGTAAGATTGTGGCGAGAATAATTGAGGTTGTGCGTAAGATTGTGTATGAGACTATGAGAGTGCATTTGCTGTTTAGTGGTGCCTATATATTCATTGATTTGATTCTGTATGAGATATTGAGTTCCACAGAAAATTGTGGGATCATCAAGAAAACCTACCATACTATTGGAACACGTGAAAATGTTCGGGAAGGACTTGATATCATCAAAGCTAAAAAGTTCATCTCGATCCGTCATTCAGAGTTATGTAACGTGGATACGGCTAAGCAATCTAATTCCATACGTATGATCGAGGACTTTATTAAAACCGAGTTTCCTAGAGAAAATCCGTCTTCTGTTTTGGATAAGGTAATTGAACTAGTTCAGAACTCAGTCGTCTCTCCTTTGCCTCCTGATCGTGTTATTGATGTGGAGCTTATAGAAGGGGTTGTGGTTGTGCATCATCATACTGGTCTGGCAAGTGAAAAGACATTACGTTATAAAATGGAATCCACGCAATGCGGGGCATGTGTTATATGCTCGGATGATGACTATGTTGTTAACCGTAACGCTAGTCGATTGCCTTGCTTGCATGCTTTTCATAAAAAATGCCTTGGCGAGTGGCTGAAAAGAAGTGATAATTGTCCCGTTTGCCGGTTGGTTATACCATCTGAATATGTTCCATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

282

Amino Acids

32.19

Weight (kDa)

7.95

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	227 - 270	6.6e-13	Ring finger domain
zf-C3HC4_2	PF13923	228 - 269	8.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	228 - 269	8.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	245 - 270	3.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	1 cut(s)	675
AclWI	GGATC	2 cut(s)	323, 397
AcvI	CACGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	807
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	530
AhlI	ACTAGT	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	49, 386, 589
AluI	AGCT	3 cut(s)	49, 386, 589
Alw26I	GTCTC	2 cut(s)	218, 556
AlwI	GGATC	2 cut(s)	323, 397
ApeKI	GCWGC	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	3 cut(s)	357, 534, 831
AspS9I	GGNCC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	829
BceAI	ACGGC	1 cut(s)	450
BcgI	CGANNNNNNTGC	2 cut(s)	720, 754
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	218, 556
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	3 cut(s)	492, 533, 726
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	90
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	76, 622
BpiI	GAAGAC	1 cut(s)	498
Bpu1102I	GCTNAGC	1 cut(s)	438
BsaAI	YACGTR	2 cut(s)	350, 458
BsaJI	CCNNGG	2 cut(s)	766, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	807
Bse118I	RCCGGY	1 cut(s)	807
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	766, 836
BseGI	GGATG	2 cut(s)	91, 703
BseLI	CCNNNNNNNGG	1 cut(s)	807
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	1 cut(s)	807
BsmAI	GTCTC	2 cut(s)	218, 556
BsmBI	CGTCTC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	315, 402, 462, 568
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	836
BspACI	CCGC	1 cut(s)	675
BspCNI	CTCAG	1 cut(s)	557
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	323, 397
BspT107I	GGYRCC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	807
BssECI	CCNNGG	2 cut(s)	766, 836
BssMI	GATC	4 cut(s)	315, 402, 462, 568
BssT1I	CCWWGG	2 cut(s)	766, 836
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	719
BstBAI	YACGTR	2 cut(s)	350, 458
BstC8I	GCNNGC	3 cut(s)	32, 743, 747
BstDEI	CTNAG	2 cut(s)	438, 544
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	91, 703
BstKTI	GATC	4 cut(s)	318, 405, 465, 571
BstMAI	GTCTC	2 cut(s)	218, 556
BstMBI	GATC	4 cut(s)	315, 402, 462, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 742
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	684, 749
BstSCI	CCNGG	1 cut(s)	81
BstSNI	TACGTA	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	424
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	2 cut(s)	91, 703
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	3 cut(s)	32, 743, 747
Cfr10I	RCCGGY	1 cut(s)	807
Cfr13I	GGNCC	1 cut(s)	58
CviAII	CATG	3 cut(s)	681, 746, 837
CviJI	RGCY	6 cut(s)	34, 49, 386, 437, 589, 778
CviKI_1	RGCY	6 cut(s)	34, 49, 386, 437, 589, 778
DdeI	CTNAG	2 cut(s)	438, 544
DpnI	GATC	4 cut(s)	317, 404, 464, 570
DpnII	GATC	4 cut(s)	315, 402, 462, 568
Eco105I	TACGTA	1 cut(s)	458
Eco130I	CCWWGG	2 cut(s)	766, 836
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	766, 836
ErhI	CCWWGG	2 cut(s)	766, 836
Esp3I	CGTCTC	1 cut(s)	556
FaeI	CATG	3 cut(s)	684, 749, 840
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	3 cut(s)	680, 745, 836
FauI	CCCGC	1 cut(s)	668
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	98, 710
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	3 cut(s)	492, 533, 726
GluI	GCNGC	1 cut(s)	90
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	3 cut(s)	684, 749, 840
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	4, 277, 662
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	1 cut(s)	808
Hpy166II	GTNNAC	2 cut(s)	130, 715
Hpy188I	TCNGA	5 cut(s)	18, 415, 540, 697, 826
Hpy188III	TCNNGA	5 cut(s)	8, 322, 362, 400, 566
Hpy8I	GTNNAC	2 cut(s)	130, 715
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	359, 590
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	5 cut(s)	132, 349, 426, 457, 649
HpyCH4V	TGCA	5 cut(s)	30, 103, 238, 613, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 742
HpyF3I	CTNAG	2 cut(s)	438, 544
HpySE526I	ACGT	5 cut(s)	132, 349, 426, 457, 649
Hsp92II	CATG	3 cut(s)	684, 749, 840
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	315, 402, 462, 568
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	6 cut(s)	68, 95, 579, 609, 614, 821
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	76, 622
MaeI	CTAG	3 cut(s)	492, 533, 726
MaeII	ACGT	5 cut(s)	132, 349, 426, 457, 649
MaeIII	GTNAC	3 cut(s)	77, 422, 719
MalI	GATC	4 cut(s)	317, 404, 464, 570
MboI	GATC	4 cut(s)	315, 402, 462, 568
MboII	GAAGA	1 cut(s)	498
MluCI	AATT	5 cut(s)	195, 307, 448, 525, 793
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	162, 193, 460, 573
MroXI	GAANNNNTTC	3 cut(s)	357, 534, 831
MseI	TTAA	4 cut(s)	138, 477, 714, 844
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	95, 742
NcoI	CCATGG	1 cut(s)	836
NdeII	GATC	4 cut(s)	315, 402, 462, 568
NlaIII	CATG	3 cut(s)	684, 749, 840
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	2 cut(s)	684, 749
PaeI	GCATGC	1 cut(s)	749
PdmI	GAANNNNTTC	3 cut(s)	357, 534, 831
PfeI	GAWTC	2 cut(s)	277, 662
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	350, 458
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	81
PspCI	CACGTG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	4 cut(s)	138, 477, 714, 844
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	315, 402, 462, 568
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	83
SfaNI	GCATC	2 cut(s)	76, 622
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	458
SnaBI	TACGTA	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	532
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	5 cut(s)	195, 307, 448, 525, 793
SsiI	CCGC	1 cut(s)	675
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	3 cut(s)	492, 533, 726
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	766, 836
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	5 cut(s)	135, 352, 429, 460, 652
TaqI	TCGA	4 cut(s)	69, 401, 465, 730
TasI	AATT	5 cut(s)	195, 307, 448, 525, 793
TfiI	GAWTC	2 cut(s)	277, 662
Tru1I	TTAA	4 cut(s)	138, 477, 714, 844
Tru9I	TTAA	4 cut(s)	138, 477, 714, 844
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	256, 385, 743
TspGWI	ACGGA	3 cut(s)	50, 395, 492
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	58
XceI	RCATGY	2 cut(s)	684, 749
XmnI	GAANNNNTTC	3 cut(s)	357, 534, 831
XspI	CTAG	3 cut(s)	492, 533, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.