Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

81523915 .. 81525426

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCGGCAACATCAAGTTCAAGGACTAGAAGGACTGGACCCTGGAGAACCGCAGGGAGATGGATCTGGAAAACTGTAACATGCCGCTGTACTGATGAGCTGGCCGAGATTCCAACGAGTGTCATTCCTCGTCGTCCATTACTAAATTCAATAAGTATGGCACCGTCAAATTCAAGCACTAGATTTGTTAGCCTCAAATCTTTTTGGACAACCGAAGTGGAATGGAATACTGAACCATGCAGCTCTAGCGTCGAGCCAACGAGTGCTGATGTGCTTAGGATCAAATTTGTGTTAATGAAGGCAATCCAACATACTATTGGAACACGCACAAATGTTTGTGAAGGATATAAAATCATTGAAGCTGAAAAGTACGTCTCAATCCGTCCTTCTGAGTTACGTAATGAGGATATGGCTAGTGTTAAGCAATCTTATTCCATACGTATGATGGAGGAGTTTATTAAAACCGAGTTTCCTGGACTAAAACCGTCTTTAGTTTTGGACAAGGTAATTGGACTAGTTCAGAACTCAATCGGCTCTCCTTTGCCTCCTGATCGTGTTATTGATGCGAAGTTGATACATGGGCTTGTGCTTGTGCATCATACTGATTTCTGGAGCGAGAAGATGTTACGTGATGAGATGGAATCTAATAGACAAGGGAATTATGATATTGCATGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.65

Weight (kDa)

8.6

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	2 cut(s)	51, 85
AclWI	GGATC	2 cut(s)	71, 287
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	3 cut(s)	145, 169, 284
AfaI	GTAC	2 cut(s)	91, 371
AgsI	TTSAA	4 cut(s)	21, 150, 174, 359
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	41, 472
AluBI	AGCT	3 cut(s)	100, 243, 362
AluI	AGCT	3 cut(s)	100, 243, 362
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	2 cut(s)	71, 287
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	3 cut(s)	145, 169, 284
AspS9I	GGNCC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	54, 439, 631
BciT130I	CCWGG	2 cut(s)	43, 474
BcoDI	GTCTC	1 cut(s)	379
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	5 cut(s)	27, 180, 246, 414, 515
BisI	GCNGC	2 cut(s)	85, 241
BlsI	GCNGC	2 cut(s)	86, 242
Bme1390I	CCNGG	2 cut(s)	43, 474
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	40, 162
BmrFI	CCNGG	2 cut(s)	43, 474
BmsI	GCATC	2 cut(s)	553, 604
BpmI	CTGGAG	2 cut(s)	64, 631
Bpu10I	CCTNAGC	1 cut(s)	275
BsaAI	YACGTR	3 cut(s)	398, 440, 629
BsaJI	CCNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	43, 474
BseDI	CCNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	1 cut(s)	252
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	63, 279, 550
BspACI	CCGC	2 cut(s)	51, 85
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	40, 162
BspPI	GGATC	2 cut(s)	71, 287
BspT107I	GGYRCC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	63, 279, 550
Bst2UI	CCWGG	2 cut(s)	43, 474
Bst4CI	ACNGT	3 cut(s)	76, 165, 486
BstBAI	YACGTR	3 cut(s)	398, 440, 629
BstC8I	GCNNGC	3 cut(s)	6, 102, 673
BstDEI	CTNAG	2 cut(s)	275, 390
BstKTI	GATC	3 cut(s)	66, 282, 553
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	3 cut(s)	63, 279, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	43, 474
BstNSI	RCATGY	2 cut(s)	84, 675
BstSCI	CCNGG	2 cut(s)	41, 472
BstSNI	TACGTA	2 cut(s)	398, 440
BstV1I	GCAGC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	6, 102, 673
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	90, 370
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	4 cut(s)	81, 237, 578, 672
CviJI	RGCY	9 cut(s)	100, 104, 192, 243, 256, 362, 413, 534, 583
CviKI_1	RGCY	9 cut(s)	100, 104, 192, 243, 256, 362, 413, 534, 583
CviQI	GTAC	2 cut(s)	90, 370
DdeI	CTNAG	2 cut(s)	275, 390
DpnI	GATC	3 cut(s)	65, 281, 552
DpnII	GATC	3 cut(s)	63, 279, 550
EaeI	YGGCCR	1 cut(s)	102
Eco105I	TACGTA	2 cut(s)	398, 440
Eco47I	GGWCC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	41, 472
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	4 cut(s)	84, 240, 581, 675
FatI	CATG	4 cut(s)	80, 236, 577, 671
Fnu4HI	GCNGC	2 cut(s)	85, 241
Fsp4HI	GCNGC	2 cut(s)	85, 241
FspBI	CTAG	5 cut(s)	27, 180, 246, 414, 515
GluI	GCNGC	2 cut(s)	85, 241
GsuI	CTGGAG	2 cut(s)	64, 631
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	4 cut(s)	84, 240, 581, 675
HinfI	GANTC	2 cut(s)	109, 641
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	2 cut(s)	391, 522
Hpy188III	TCNNGA	3 cut(s)	67, 548, 610
Hpy99I	CGWCG	2 cut(s)	135, 254
HpyAV	CCTTC	4 cut(s)	24, 292, 335, 396
HpyCH4III	ACNGT	3 cut(s)	76, 165, 486
HpyCH4IV	ACGT	4 cut(s)	372, 397, 439, 628
HpyCH4V	TGCA	3 cut(s)	240, 595, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	275, 390
HpySE526I	ACGT	4 cut(s)	372, 397, 439, 628
Hsp92II	CATG	4 cut(s)	84, 240, 581, 675
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	63, 279, 550
LmnI	GCTCC	1 cut(s)	612
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	2 cut(s)	553, 604
MaeI	CTAG	5 cut(s)	27, 180, 246, 414, 515
MaeII	ACGT	4 cut(s)	372, 397, 439, 628
MaeIII	GTNAC	3 cut(s)	76, 393, 624
MalI	GATC	3 cut(s)	65, 281, 552
MboI	GATC	3 cut(s)	63, 279, 550
MboII	GAAGA	1 cut(s)	631
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	5 cut(s)	145, 169, 284, 507, 658
MmeI	TCCRAC	2 cut(s)	137, 331
MnlI	CCTC	5 cut(s)	138, 203, 397, 442, 555
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	4 cut(s)	293, 420, 459, 679
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	43, 474
MvaI	CCWGG	2 cut(s)	43, 474
MwoI	GCNNNNNNNGC	1 cut(s)	246
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	3 cut(s)	63, 279, 550
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	84, 240, 581, 675
NlaIV	GGNNCC	2 cut(s)	40, 162
NmeAIII	GCCGAG	1 cut(s)	130
NspI	RCATGY	2 cut(s)	84, 675
PaeI	GCATGC	1 cut(s)	675
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	109, 641
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	86, 242
Ppu21I	YACGTR	3 cut(s)	398, 440, 629
Psp6I	CCWGG	2 cut(s)	41, 472
PspGI	CCWGG	2 cut(s)	41, 472
PspN4I	GGNNCC	2 cut(s)	40, 162
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	2 cut(s)	91, 371
RsaNI	GTAC	2 cut(s)	90, 370
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	4 cut(s)	293, 420, 459, 679
SatI	GCNGC	2 cut(s)	85, 241
Sau3AI	GATC	3 cut(s)	63, 279, 550
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	43, 474
SetI	ASST	8 cut(s)	102, 245, 364, 375, 400, 442, 507, 631
SfaNI	GCATC	2 cut(s)	553, 604
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	440
SnaBI	TACGTA	2 cut(s)	398, 440
SpeI	ACTAGT	1 cut(s)	514
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	5 cut(s)	145, 169, 284, 507, 658
SsiI	CCGC	2 cut(s)	51, 85
SspMI	CTAG	5 cut(s)	27, 180, 246, 414, 515
StyD4I	CCNGG	2 cut(s)	41, 472
TaaI	ACNGT	3 cut(s)	76, 165, 486
TaiI	ACGT	4 cut(s)	375, 400, 442, 631
TaqI	TCGA	1 cut(s)	252
TasI	AATT	5 cut(s)	145, 169, 284, 507, 658
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	109, 641
Tru1I	TTAA	4 cut(s)	293, 420, 459, 679
Tru9I	TTAA	4 cut(s)	293, 420, 459, 679
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	145, 169, 284
XceI	RCATGY	2 cut(s)	84, 675
XcmI	CCANNNNNNNNNTGG	2 cut(s)	314, 442
XspI	CTAG	5 cut(s)	27, 180, 246, 414, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.