Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

78719691 .. 78723072

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0589000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAGTTCTACATTTTCACTTGCACCAAAACCTTACATTAGAGAGAGCAATGGAAAACTCCTGCCCCCAAAATCTATGCTCACAACAATTAGAGCTGAAGTGATTACAGCTCCCAAGCAAAGAAGCACGCGGATTTTTCCTGAACTATCAATACAAGGCATTCCTGTTGCTGATTTGCATGTACAAGAAATTGTTCAAAGGCAATCCAAGACTTACAACACAGCCAATGGAGGTACTAGCCGAAAGCCACAGTTCGATCCAAGCTTTCTTGAAGAAGCGTATGAAAGGTGCAGGAACATCTGTGCAGAATATGCCAAGACATTCTATCTAGGCACTTTGCTAATGACAGAGGAGCGTCAAAAGGCAATATGGGCAATCTATGTTTGGTGTAGAAGAACAGATGAACTGGTTGATGGCCCCAATTCTGGGCACACGAACTCTGAAGTTCTTGATAGATGGGAAGAGAGACTAGAAGACATTTTCGAAGGACGACCTTATGACATGCTTGATGCTGCATTAACTCATACTGTTCTCAACTTCCCCTTAGACATGAAGCCTTTTAGGGACATGATCGAGGGTATGCGAATGGACACAAGAAAATGCCGATATCAGAATTTTCAAGAGCTTTATCTCTACTGCTACTATGTGGCTGGAACAGTTGGCCTAATGAGTGTTCCTGTAATGGGAATTGCACCAGATTCTCCGATTTCTGCTCAAAGTACATATGATGCTGCACTCTACTTGGGTATAGGGAATCAACTCACAAACATACTTAGAGATGTCGGGGAGGATGCTGCAAGAGGTAGAGTTTATCTTCCCCAAGACGAGCTGGCACAGTTTGGGTTATCCGACGACGATGTTTTTTCAAGAAAGGTCACTGATCAATGGAGAGAGTTCATGAAAGAACAGATTACTAGAGCGAGATTCTATTTCAACCTGGCAGAGGAGGGTGCTTCTCAACTTGAAAAGGATAGCCGTTGGCCGGTATGGTCATCGTTGCTGATATATGGAAACATCTTGGATGCAATTGAGGAAAATGATTACGATAACTTGACAAAGAGAGCATATGTAGGCAGAGCTAAGAAACTTCTCATGTTGCCTTTGGCTTACACAAAATCCCTTAATACACCTAGTTTGATCTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

382

Amino Acids

43.83

Weight (kDa)

5.41

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQS_PSY	PF00494	103 - 359	5.1e-73	Squalene/phytoene synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	980
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	2 cut(s)	117, 462
AfaI	GTAC	3 cut(s)	183, 235, 721
AfiI	CCNNNNNNNGG	5 cut(s)	425, 426, 683, 943, 982
AgsI	TTSAA	6 cut(s)	197, 272, 620, 867, 934, 965
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	6 cut(s)	95, 110, 264, 625, 829, 1079
AluI	AGCT	6 cut(s)	95, 110, 264, 625, 829, 1079
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	3 cut(s)	415, 661, 980
ApeKI	GCWGC	3 cut(s)	512, 731, 794
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	499, 718, 781
BccI	CCATC	2 cut(s)	407, 450
BceAI	ACGGC	1 cut(s)	960
BciT130I	CCWGG	1 cut(s)	938
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	5 cut(s)	237, 329, 470, 915, 1131
BisI	GCNGC	3 cut(s)	513, 732, 795
BlsI	GCNGC	3 cut(s)	514, 733, 796
Bme1390I	CCNGG	1 cut(s)	938
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	938
BmsI	GCATC	4 cut(s)	499, 718, 781, 1012
BpiI	GAAGAC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	5 cut(s)	425, 426, 683, 943, 982
Bse118I	RCCGGY	1 cut(s)	982
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	938
BseGI	GGATG	2 cut(s)	796, 1027
BseLI	CCNNNNNNNGG	5 cut(s)	425, 426, 683, 943, 982
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	365, 959
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	3 cut(s)	499, 718, 781
BsgI	GTGCAG	3 cut(s)	310, 324, 717
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	417, 663, 982
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	5 cut(s)	425, 426, 683, 943, 982
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	417, 663, 982
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	4 cut(s)	256, 570, 880, 1137
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	3 cut(s)	417, 663, 982
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	982
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	982
BssMI	GATC	4 cut(s)	256, 570, 880, 1137
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	4 cut(s)	252, 529, 658, 837
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	128, 831
BstDEI	CTNAG	3 cut(s)	544, 773, 1080
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	2 cut(s)	796, 1027
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	259, 573, 883, 1140
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	256, 570, 880, 1137
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 371
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	2 cut(s)	182, 505
BstSCI	CCNGG	1 cut(s)	936
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	499, 718, 781
BstV2I	GAAGAC	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	417, 663, 982
BtsCI	GGATG	2 cut(s)	796, 1027
BtsIMutI	CAGTG	1 cut(s)	876
Cac8I	GCNNGC	2 cut(s)	128, 831
CciI	TCATGA	1 cut(s)	897
Cfr10I	RCCGGY	1 cut(s)	982
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	182, 234, 720
CviAII	CATG	6 cut(s)	179, 502, 550, 568, 898, 1093
CviQI	GTAC	3 cut(s)	182, 234, 720
DdeI	CTNAG	3 cut(s)	544, 773, 1080
DpnI	GATC	4 cut(s)	258, 572, 882, 1139
DpnII	GATC	4 cut(s)	256, 570, 880, 1137
EaeI	YGGCCR	1 cut(s)	980
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	117, 462
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	608
FaeI	CATG	6 cut(s)	182, 505, 553, 571, 901, 1096
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	6 cut(s)	178, 501, 549, 567, 897, 1092
FauNDI	CATATG	2 cut(s)	724, 1066
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	513, 732, 795
FokI	GGATG	2 cut(s)	803, 1034
Fsp4HI	GCNGC	3 cut(s)	513, 732, 795
FspBI	CTAG	5 cut(s)	237, 329, 470, 915, 1131
GluI	GCNGC	3 cut(s)	513, 732, 795
HaeIII	GGCC	3 cut(s)	417, 663, 982
HapII	CCGG	1 cut(s)	983
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	6 cut(s)	182, 505, 553, 571, 901, 1096
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	3 cut(s)	698, 754, 924
HpaII	CCGG	1 cut(s)	983
Hpy188I	TCNGA	4 cut(s)	442, 612, 705, 850
Hpy188III	TCNNGA	6 cut(s)	140, 269, 449, 620, 867, 898
Hpy99I	CGWCG	2 cut(s)	854, 857
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	4 cut(s)	252, 529, 658, 837
HpyCH4V	TGCA	9 cut(s)	23, 178, 291, 305, 515, 692, 734, 797, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 371
HpyF3I	CTNAG	3 cut(s)	544, 773, 1080
Hsp92II	CATG	6 cut(s)	182, 505, 553, 571, 901, 1096
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	256, 570, 880, 1137
LmnI	GCTCC	2 cut(s)	115, 352
Lsp1109I	GCAGC	3 cut(s)	499, 718, 781
LweI	GCATC	4 cut(s)	499, 718, 781, 1012
MaeI	CTAG	5 cut(s)	237, 329, 470, 915, 1131
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	4 cut(s)	258, 572, 882, 1139
MboI	GATC	4 cut(s)	256, 570, 880, 1137
MboII	GAAGA	5 cut(s)	284, 405, 473, 485, 806
MfeI	CAATTG	1 cut(s)	1026
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	6 cut(s)	87, 189, 421, 613, 687, 1026
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	8 cut(s)	224, 343, 568, 781, 794, 937, 940, 1024
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	518, 1122
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	1 cut(s)	938
MunI	CAATTG	1 cut(s)	1026
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	311, 371
NdeI	CATATG	2 cut(s)	724, 1066
NdeII	GATC	4 cut(s)	256, 570, 880, 1137
NlaIII	CATG	6 cut(s)	182, 505, 553, 571, 901, 1096
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	2 cut(s)	182, 505
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	897
PctI	GAATGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	698, 754, 924
PkrI	GCNGC	3 cut(s)	514, 733, 796
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	416
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
RsaI	GTAC	3 cut(s)	183, 235, 721
RsaNI	GTAC	3 cut(s)	182, 234, 720
SaqAI	TTAA	2 cut(s)	518, 1122
SatI	GCNGC	3 cut(s)	513, 732, 795
Sau3AI	GATC	4 cut(s)	256, 570, 880, 1137
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	938
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	4 cut(s)	499, 718, 781, 1012
SfuI	TTCGAA	1 cut(s)	483
Sse9I	AATT	6 cut(s)	87, 189, 421, 613, 687, 1026
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	5 cut(s)	237, 329, 470, 915, 1131
StyD4I	CCNGG	1 cut(s)	936
TaaI	ACNGT	4 cut(s)	252, 529, 658, 837
TaqI	TCGA	3 cut(s)	255, 483, 573
TasI	AATT	6 cut(s)	87, 189, 421, 613, 687, 1026
TatI	WGTACW	2 cut(s)	181, 719
TfiI	GAWTC	3 cut(s)	698, 754, 924
Tru1I	TTAA	2 cut(s)	518, 1122
Tru9I	TTAA	2 cut(s)	518, 1122
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	3 cut(s)	512, 731, 794
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	5 cut(s)	297, 417, 566, 886, 914
TspRI	CASTG	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	941
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	2 cut(s)	182, 505
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	5 cut(s)	237, 329, 470, 915, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.