Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Forward (+)

3241398 .. 3243342

Gene Structure 1945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTTTCGTCAAAGAACTATACCATCCAGCCTTATTATGATGGCGCAATGGCATTGTGGATTACTAATGATCGAGCATGGCCGAACGCAGGGGACGTGATTCCACTGGGCGATGAGCTCAAGATCCATTTTGTATTTTACAAGCAAACCATACATCTATTTGACACTGTTAAAGAAGAATACAACTTAGTCCACAGTGAAAAGATTATTACGATCCATCCTTCCGAGCTACGTAATGAAGATACTGCTAGTATTATGCAATCTCCTTCAATGCGTATGATCAAGCAGATTATTGACACCGAAATTCCTTCATCAGAAAAGTCAGTGCGGCTTGAAGTCGAGGAAGGTATACTTCGAATTGTTCAGAACCCAAATACACCCATCTTAGTGTCTCCTAACCATAGGATTTTTGTTAAAGCACTTGATGGGATTAAGATATTGCACGATGCTAGTGAGAAGAGTTTGAAACGGAGAGTACATGATCATTTGGAAGCTGCGCGATGCTCAACATGTCCTATTTGTATGGACGAGATAAAGCTTAATAAACCTACTCGATTGCCTTGCTTGCACTTGTTTCATCACTGGTGCGTTGCTAAGTGGCTGGAGATCAAGCACGAATGCCCCTATTGCCGAAGTCCAGTACCTCATGAATTTGTTACATGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

222

Amino Acids

25.85

Weight (kDa)

6.66

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	170 - 211	8.4e-12	Ring finger domain
zf-C3HC4_2	PF13923	171 - 210	3.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	171 - 210	7.7e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	1 cut(s)	499
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	118, 208
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	303, 650
AfaI	GTAC	2 cut(s)	477, 642
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	3 cut(s)	270, 335, 466
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	4 cut(s)	118, 229, 494, 538
AluI	AGCT	4 cut(s)	118, 229, 494, 538
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	118, 208
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	2 cut(s)	303, 650
AspLEI	GCGC	2 cut(s)	47, 499
AsuII	TTCGAA	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	5 cut(s)	32, 35, 225, 389, 419
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BclI	TGATCA	2 cut(s)	279, 481
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	249, 450
BisI	GCNGC	2 cut(s)	329, 495
BlsI	GCNGC	2 cut(s)	330, 496
BmgBI	CACGTC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	436, 491
BmuI	ACTGGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	111, 587, 638
Bse3DI	GCAATG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	24, 217
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	111, 587, 638
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	499
BspHI	TCATGA	1 cut(s)	646
BspPI	GGATC	2 cut(s)	118, 208
BspT104I	TTCGAA	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	111, 587, 638
BssMI	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
BssNAI	GTATAC	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	169, 197
Bst6I	CTCTTC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	3 cut(s)	187, 385, 594
BstF5I	GGATG	2 cut(s)	24, 217
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	47, 499
BstKTI	GATC	6 cut(s)	73, 126, 216, 282, 484, 609
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 627
BstNSI	RCATGY	1 cut(s)	513
BstSNI	TACGTA	1 cut(s)	233
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	82
BtgZI	GCGATG	2 cut(s)	126, 514
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	24, 217
BtsIMutI	CAGTG	5 cut(s)	104, 165, 202, 330, 580
Cac8I	GCNNGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	2 cut(s)	47, 499
Csp6I	GTAC	2 cut(s)	476, 641
CviAII	CATG	5 cut(s)	78, 479, 510, 647, 660
CviJI	RGCY	8 cut(s)	31, 82, 118, 229, 331, 494, 538, 601
CviKI_1	RGCY	8 cut(s)	31, 82, 118, 229, 331, 494, 538, 601
CviQI	GTAC	2 cut(s)	476, 641
DdeI	CTNAG	3 cut(s)	187, 385, 594
DpnI	GATC	6 cut(s)	72, 125, 215, 281, 483, 608
DpnII	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	118
Eco105I	TACGTA	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	5 cut(s)	81, 482, 513, 650, 663
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	5 cut(s)	77, 478, 509, 646, 659
FbaI	TGATCA	2 cut(s)	279, 481
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	329, 495
FokI	GGATG	2 cut(s)	11, 204
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	329, 495
FspBI	CTAG	2 cut(s)	249, 450
GlaI	GCGC	2 cut(s)	46, 498
GluI	GCNGC	2 cut(s)	329, 495
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	47, 499
Hin1II	CATG	5 cut(s)	81, 482, 513, 650, 663
Hin6I	GCGC	2 cut(s)	45, 497
HinP1I	GCGC	2 cut(s)	45, 497
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	193, 350
Hpy188I	TCNGA	3 cut(s)	226, 316, 366
Hpy188III	TCNNGA	2 cut(s)	121, 647
Hpy8I	GTNNAC	2 cut(s)	193, 350
HpyAV	CCTTC	4 cut(s)	231, 276, 318, 338
HpyCH4III	ACNGT	2 cut(s)	169, 197
HpyCH4IV	ACGT	2 cut(s)	96, 232
HpyCH4V	TGCA	3 cut(s)	259, 442, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 627
HpyF3I	CTNAG	3 cut(s)	187, 385, 594
HpySE526I	ACGT	2 cut(s)	96, 232
Hsp92II	CATG	5 cut(s)	81, 482, 513, 650, 663
HspAI	GCGC	2 cut(s)	45, 497
Ksp22I	TGATCA	2 cut(s)	279, 481
Kzo9I	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
LpnPI	CCDG	6 cut(s)	41, 75, 92, 568, 587, 651
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	2 cut(s)	436, 491
MaeI	CTAG	2 cut(s)	249, 450
MaeII	ACGT	2 cut(s)	96, 232
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	6 cut(s)	72, 125, 215, 281, 483, 608
MboI	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
MboII	GAAGA	3 cut(s)	188, 251, 469
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	303, 357, 650
MnlI	CCTC	2 cut(s)	334, 654
MseI	TTAA	5 cut(s)	171, 414, 432, 540, 667
MslI	CAYNNNNRTG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	623
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	565, 627
NdeII	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
NlaIII	CATG	5 cut(s)	81, 482, 513, 650, 663
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	355
PagI	TCATGA	1 cut(s)	646
PciI	ACATGT	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	330, 496
Ppu21I	YACGTR	1 cut(s)	233
PscI	ACATGT	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	2 cut(s)	477, 642
RsaNI	GTAC	2 cut(s)	476, 641
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	5 cut(s)	171, 414, 432, 540, 667
SatI	GCNGC	2 cut(s)	329, 495
Sau3AI	GATC	6 cut(s)	70, 123, 213, 279, 481, 606
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	9 cut(s)	99, 120, 231, 235, 349, 496, 540, 550, 646
SfaNI	GCATC	2 cut(s)	436, 491
SfuI	TTCGAA	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SnaBI	TACGTA	1 cut(s)	233
Sse9I	AATT	3 cut(s)	303, 357, 650
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	2 cut(s)	249, 450
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	169, 197
TaiI	ACGT	2 cut(s)	99, 235
TaqI	TCGA	4 cut(s)	73, 339, 355, 553
TasI	AATT	3 cut(s)	303, 357, 650
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	5 cut(s)	171, 414, 432, 540, 667
Tru9I	TTAA	5 cut(s)	171, 414, 432, 540, 667
TscAI	CASTG	5 cut(s)	111, 172, 202, 330, 587
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	252, 300, 566, 663
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	5 cut(s)	111, 172, 202, 330, 587
XapI	RAATTY	2 cut(s)	303, 650
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	2 cut(s)	249, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.