Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

3167486 .. 3169717

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCTCTGGTACCGACAAAGCACACCATCTATTATGCCGAGGAATGCGCTGCGGAATGGAGACTGTGCAGCTCTGTTGATACCACAGCCCAGATGATTCCACCAAGTAATGATGCGCTTATGATCCGATTTATGTTCTACAAGGAAACCATGCACACTTTTACACCAGATAGATATGCTCAAGAATATTGGATGATCCCCCAATCCCCAACAAAGGCCATTAGAGTCCGTCCTTCCGAGTTCCATAACCACAATTCTACTAGTATTATGCAATCTCCTTCGGGGCGTATGATGGTAGACTTTATCAACACCTATTTTCCTCCAGAAGACAAAGAAGATGTGCCTATAGTTGTGGCACAATTAATTGATCTTGTTCAGAATTCCATTCAATCAGAAACCAAGGGTTTTGTTGATGTGCAACGACGTGACACAATTGAAATTATGCATCATCTTGATGATGAAGCAACTAGAGCGTGTATGCATGGTTATTTTGAAGCTACGAAACGGGGGACATGTGCTATTTGTATGGATGATTTTGAGATTGGACGTGACGACGCTATTCGATTGCCTTGCTTACATGTTTTTCATGGACCTTGCATTTTTAAGTGGCTGGGGATCAATCCCCATTGTCCCGTTTGCTGGCATACTTTTAAAAAACCTGAACTAGCACCATGGTTTAATACACCTTTGCAGGAAGATATTTGGATGTTGCATTCAAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

241

Amino Acids

28.01

Weight (kDa)

5.59

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	171 - 213	2.5e-12	Ring finger domain
zf-C3HC4_2	PF13923	172 - 213	7.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	172 - 200	1.8e-08	RING-like zinc finger
zf-C3HC4	PF00097	172 - 213	3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	3 cut(s)	118, 190, 623
AcsI	RAATTY	1 cut(s)	379
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	214, 639
AflIII	ACRYGT	2 cut(s)	512, 577
AgsI	TTSAA	4 cut(s)	389, 437, 494, 717
AhlI	ACTAGT	1 cut(s)	260
AjiI	CACGTC	2 cut(s)	425, 548
AluBI	AGCT	2 cut(s)	72, 497
AluI	AGCT	2 cut(s)	72, 497
Alw26I	GTCTC	2 cut(s)	9, 55
AlwI	GGATC	3 cut(s)	118, 190, 623
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	50, 69
ApoI	RAATTY	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	362
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	50, 118
AspS9I	GGNCC	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	37, 81
BccI	CCATC	2 cut(s)	35, 286
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BcoDI	GTCTC	2 cut(s)	9, 55
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	3 cut(s)	261, 468, 665
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	51, 70
BlsI	GCNGC	2 cut(s)	52, 71
Bme18I	GGWCC	1 cut(s)	590
BmgBI	CACGTC	2 cut(s)	425, 548
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	2 cut(s)	103, 454
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	39, 399, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 639
BseDI	CCNNGG	3 cut(s)	39, 399, 671
BseGI	GGATG	3 cut(s)	198, 535, 711
BseLI	CCNNNNNNNGG	2 cut(s)	214, 639
BseXI	GCAGC	2 cut(s)	37, 81
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	10
BslFI	GGGAC	2 cut(s)	523, 615
BslI	CCNNNNNNNGG	2 cut(s)	214, 639
BsmAI	GTCTC	2 cut(s)	9, 55
BsmFI	GGGAC	2 cut(s)	523, 615
BsmI	GAATGC	2 cut(s)	50, 712
BsnI	GGCC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	123, 195, 367, 615
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	118, 190, 623
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	39, 399, 671
BssMI	GATC	4 cut(s)	123, 195, 367, 615
BssT1I	CCWWGG	2 cut(s)	399, 671
Bst4CI	ACNGT	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	641
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	198, 535, 711
BstHHI	GCGC	2 cut(s)	50, 118
BstKTI	GATC	4 cut(s)	126, 198, 370, 618
BstMAI	GTCTC	2 cut(s)	9, 55
BstMBI	GATC	4 cut(s)	123, 195, 367, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNSI	RCATGY	2 cut(s)	516, 581
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	37, 81
BstV2I	GAAGAC	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	218
BtgI	CCRYGG	1 cut(s)	671
BtrI	CACGTC	2 cut(s)	425, 548
BtsCI	GGATG	3 cut(s)	198, 535, 711
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	2 cut(s)	50, 118
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	6 cut(s)	151, 482, 513, 578, 587, 672
CviJI	RGCY	5 cut(s)	72, 89, 218, 497, 610
CviKI_1	RGCY	5 cut(s)	72, 89, 218, 497, 610
CviQI	GTAC	1 cut(s)	11
DpnI	GATC	4 cut(s)	125, 197, 369, 617
DpnII	GATC	4 cut(s)	123, 195, 367, 615
DraI	TTTAAA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	399, 671
Eco47I	GGWCC	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	399, 671
EcoT22I	ATGCAT	2 cut(s)	447, 483
ErhI	CCWWGG	2 cut(s)	399, 671
FaeI	CATG	6 cut(s)	154, 485, 516, 581, 590, 675
FaqI	GGGAC	2 cut(s)	523, 615
FatI	CATG	6 cut(s)	150, 481, 512, 577, 586, 671
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	51, 70
FokI	GGATG	3 cut(s)	205, 542, 718
Fsp4HI	GCNGC	2 cut(s)	51, 70
FspBI	CTAG	3 cut(s)	261, 468, 665
GlaI	GCGC	2 cut(s)	49, 117
GluI	GCNGC	2 cut(s)	51, 70
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	2 cut(s)	50, 118
Hin1II	CATG	6 cut(s)	154, 485, 516, 581, 590, 675
Hin6I	GCGC	2 cut(s)	48, 116
HinP1I	GCGC	2 cut(s)	48, 116
HinfI	GANTC	2 cut(s)	97, 225
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	128, 238, 378, 394
Hpy188III	TCNNGA	3 cut(s)	182, 323, 452
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	2 cut(s)	426, 557
HpyAV	CCTTC	2 cut(s)	243, 288
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	424, 547
HpyCH4V	TGCA	9 cut(s)	69, 154, 271, 418, 445, 481, 597, 691, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpySE526I	ACGT	2 cut(s)	424, 547
Hsp92II	CATG	6 cut(s)	154, 485, 516, 581, 590, 675
HspAI	GCGC	2 cut(s)	48, 116
KpnI	GGTACC	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	123, 195, 367, 615
LpnPI	CCDG	7 cut(s)	104, 180, 336, 596, 625, 672, 677
Lsp1109I	GCAGC	2 cut(s)	37, 81
LweI	GCATC	2 cut(s)	103, 454
MaeI	CTAG	3 cut(s)	261, 468, 665
MaeII	ACGT	2 cut(s)	424, 547
MaeIII	GTNAC	2 cut(s)	425, 548
MalI	GATC	4 cut(s)	125, 197, 369, 617
MboI	GATC	4 cut(s)	123, 195, 367, 615
MboII	GAAGA	3 cut(s)	338, 347, 707
MfeI	CAATTG	1 cut(s)	432
MluCI	AATT	6 cut(s)	253, 359, 363, 379, 432, 438
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	34, 330
Mph1103I	ATGCAT	2 cut(s)	447, 483
MseI	TTAA	4 cut(s)	362, 603, 651, 678
MslI	CAYNNNNRTG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	432
Mva1269I	GAATGC	2 cut(s)	50, 712
MwoI	GCNNNNNNNGC	1 cut(s)	470
NcoI	CCATGG	1 cut(s)	671
NdeII	GATC	4 cut(s)	123, 195, 367, 615
NlaIII	CATG	6 cut(s)	154, 485, 516, 581, 590, 675
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	425, 548
NsiI	ATGCAT	2 cut(s)	447, 483
NspI	RCATGY	2 cut(s)	516, 581
PciI	ACATGT	2 cut(s)	512, 577
PctI	GAATGC	2 cut(s)	50, 712
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	52, 71
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PscI	ACATGT	2 cut(s)	512, 577
PshBI	ATTAAT	1 cut(s)	362
PspFI	CCCAGC	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	590
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	362, 603, 651, 678
SatI	GCNGC	2 cut(s)	51, 70
Sau3AI	GATC	4 cut(s)	123, 195, 367, 615
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	1 cut(s)	234
SetI	ASST	8 cut(s)	74, 314, 427, 499, 550, 595, 661, 688
SfaNI	GCATC	2 cut(s)	103, 454
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	6 cut(s)	253, 359, 363, 379, 432, 438
SsiI	CCGC	1 cut(s)	53
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	3 cut(s)	261, 468, 665
StyI	CCWWGG	2 cut(s)	399, 671
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	2 cut(s)	427, 550
TaqI	TCGA	1 cut(s)	562
TasI	AATT	6 cut(s)	253, 359, 363, 379, 432, 438
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	362, 603, 651, 678
Tru9I	TTAA	4 cut(s)	362, 603, 651, 678
TseFI	GTSAC	2 cut(s)	425, 548
TseI	GCWGC	2 cut(s)	50, 69
Tsp45I	GTSAC	2 cut(s)	425, 548
TspDTI	ATGAA	2 cut(s)	474, 575
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	590
VspI	ATTAAT	1 cut(s)	362
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	2 cut(s)	516, 581
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	3 cut(s)	261, 468, 665
Zsp2I	ATGCAT	2 cut(s)	447, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.