Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001005

Physical Location & Seq

Genomic Coordinates Reverse (-)

337620 .. 337859

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATTGTGCACGAAACTAATGATAAGCTGGGAGAAAATAGAGTACTTGATTATATTGAAACCACGAGACATGGGACATGTGTTATTTGCATGGATGACTTCAACGTTGGACGTGATGCTAGTCGATTGCCTTGCTTGCACATTTTTCATCGAAATTGCATTGTTGATTGGCTGCGAAGAAATCATAATTGTCCCATTTGTCGGCATTCGATGCCACCTGCATTGATTACATGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0001959 GO:0001960 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0009794 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0010803 GO:0010804 GO:0012501 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0031624 GO:0032088 GO:0032446 GO:0032479 GO:0032480 GO:0032648 GO:0032688 GO:0036211 GO:0040019 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043433 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045787 GO:0045931 GO:0045977 GO:0045995 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051090 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051241 GO:0051252 GO:0051716 GO:0051726 GO:0060255 GO:0060759 GO:0060761 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070182 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

79

Amino Acids

9.28

Weight (kDa)

6.99

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	25 - 70	3.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	26 - 68	1.7e-16	Ring finger domain
zf-C3HC4_2	PF13923	27 - 67	4.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	27 - 54	9.9e-10	RING-like zinc finger
zf-RING_UBOX	PF13445	27 - 65	1.8e-09	RING-type zinc-finger
zf-C3HC4	PF00097	27 - 67	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	27 - 69	4.1e-06	zinc-RING finger domain
zf-rbx1	PF12678	44 - 68	1.9e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001005)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03311 FvH4_1g03372 FvH4_1g03372 FvH4_1g03372 FvH4_1g03410 FvH4_7g17680
rosa_chinensis	RchiOBHm_Chr2g0088491 RchiOBHm_Chr4g0384981 RchiOBHm_Chr6g0259471
rosa_laevigata	RLG00000014530 RLG00000015792 RLG00000015960 RLG00000022174 RLG00000029710 RLG00000033515
rosa_multiflora	Rmu_sc0004733.1_g000012 Rmu_sc0004805.1_g000053 Rmu_sc0006835.1_g000015 Rmu_sc0007698.1_g000010 Rmu_sc0014136.1_g000011 Rmu_sc0015442.1_g000010
rosa_roxburghii	Rroxscaffold_1G00021120 Rroxscaffold_2G00141560 Rroxscaffold_2G00149520 Rroxscaffold_2G00152480 Rroxscaffold_2G00154190 Rroxscaffold_5G00334720 Rroxscaffold_7G00206750
rosa_rugosa	Rorug01G0027500 Rorug01G0484600 Rorug05G0589000 Rorug06G0124200
rosa_samantha	Rh1CG038700 Rh1DG031100 Rh2AG022000 Rh2AG034300 Rh2AG039500 Rh2AG040000 Rh2AG041000 Rh2AG143100 Rh2AG402000 Rh2BG022100 Rh2BG038500 Rh2BG148200 Rh2CG022800 Rh2CG039700 Rh2CG044000 Rh2DG022500 Rh2DG034000 Rh2DG039000 Rh2DG040100 Rh2DG148800 Rh2DG422100 Rh3DG253200 Rh3DG253700 Rh4AG002200 Rh4AG021800 Rh4AG359100 Rh5AG287200 Rh5AG287600 Rh5AG306100 Rh6DG088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AclI	AACGTT	1 cut(s)	105
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	59, 103
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	61
Alw44I	GTGCAC	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	113
BmsI	GCATC	2 cut(s)	106, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	88, 177
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	88, 177
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	226
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 211
BstNSI	RCATGY	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	4 cut(s)	71, 78, 91, 231
CviJI	RGCY	3 cut(s)	28, 172, 235
CviKI_1	RGCY	3 cut(s)	28, 172, 235
CviQI	GTAC	1 cut(s)	44
FaeI	CATG	4 cut(s)	74, 81, 94, 234
FaiI	YATR	6 cut(s)	54, 72, 79, 92, 186, 232
FaqI	GGGAC	2 cut(s)	88, 177
FatI	CATG	4 cut(s)	70, 77, 90, 230
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	173
GsaI	CCCAGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	74, 81, 94, 234
Hpy166II	GTNNAC	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	105, 112
HpyCH4V	TGCA	5 cut(s)	10, 90, 139, 159, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 211
HpySE526I	ACGT	2 cut(s)	105, 112
Hsp92II	CATG	4 cut(s)	74, 81, 94, 234
LpnPI	CCDG	2 cut(s)	14, 231
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	106, 201
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	2 cut(s)	105, 112
MboII	GAAGA	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	154, 187
MmeI	TCCRAC	1 cut(s)	88
MseI	TTAA	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	136, 211
NlaIII	CATG	4 cut(s)	74, 81, 94, 234
NspI	RCATGY	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	226
PciI	ACATGT	1 cut(s)	77
PctI	GAATGC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	174
PscI	ACATGT	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	173
ScaI	AGTACT	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	4 cut(s)	30, 108, 115, 220
SfaNI	GCATC	2 cut(s)	106, 201
Sse9I	AATT	2 cut(s)	154, 187
SspMI	CTAG	1 cut(s)	120
TaiI	ACGT	2 cut(s)	108, 115
TaqI	TCGA	3 cut(s)	124, 151, 209
TasI	AATT	2 cut(s)	154, 187
TatI	WGTACW	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	8
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.