Rw7G016140

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002304
Physical Location & Seq
Reverse (-)
16489200 .. 16495132
5933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016140.1

Sequence Viewer

Length: 975 bp
ATGGTGTTAGAAAAAAAAAAAAAGAGATCGACATCGATCAGCTGCATTTTCTGGCCGCCACCATCAGAGACTGTGAACACCAATAATACATGGACATCTGAGGGGGGGTCGGGGTGGGTTCATAACTTGAGATCTCTCCTCTCTGTTTATTATTTAGATATTGGCTATCATGTCCCTGTGGGTTTGAGAAATGAATTTAGTGTTGAACGAGATGATATTAAGGAACCTTTTACTGAGGTATCCATGTTCAAGAAGAATTACGATCATGTACCAAAAGATACATACTTTGGAATGTACAAAGAATCAACCCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGAGAAATCAGCTGCTCAAATCCAAGATAATTTCCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACCCCAAAACTGGAAGAGGCTGCTGTTCTACACTACATATATGCCAAATTTTCGGACTTAATGTCAAGACATGATCAGTGTGGCTGCAAGCCTACAAGAGAATATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTCTATTATTTTCCACATTAAAAGAAGAATATGGTTCATCAATTACATCTCTAAGGAACTGGTTTGGTTGTTGTCGGTTGGTCTGGCCTATTGCTTTTTCTTTGTATGGGGTAGGTTCAGCAGGTCAAAGACATATACAAGCTGGTTTAGCCTCTGTATTTTCCACTCCTGTGAGTCTAGCTTCTTTTACTAAACTAGGAAGAGAATGTAGTAGCTTCAAAGATTACAAATCAGACAGTTTGATTGTTTTCGACAATTCAACTGGTCTGATGGCCCTATGTGTACAAACTATTCCTCTTGTCTATTTTCATTCCTTTCACACATATGATCATCTTCATCTCATAAATTCAATGACCTGTGGTTTTTCCAGGGAATACCAGCAGCAAGTAAATCATTGGATAGTTCTGATGCATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

324

Amino Acids

37.42

Weight (kDa)

8.61

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 668
AciI CCGC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 4 cut(s) 194, 464, 545, 901
AfaI GTAC 3 cut(s) 270, 296, 840
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 5 cut(s) 206, 250, 775, 816, 906
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 1 cut(s) 923
AleI CACNNNNGTG 1 cut(s) 725
AluBI AGCT 6 cut(s) 42, 356, 557, 698, 737, 771
AluI AGCT 6 cut(s) 42, 356, 557, 698, 737, 771
Alw21I GWGCWC 2 cut(s) 394, 559
Alw26I GTCTC 1 cut(s) 62
Alw44I GTGCAC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 3 cut(s) 53, 641, 828
ApaLI GTGCAC 1 cut(s) 390
ApeKI GCWGC 5 cut(s) 42, 356, 437, 501, 937
ApoI RAATTY 4 cut(s) 194, 464, 545, 901
AspS9I GGNCC 1 cut(s) 829
BaeGI GKGCMC 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanII GRGCYC 1 cut(s) 559
Bbv12I GWGCWC 2 cut(s) 394, 559
BbvI GCAGC 5 cut(s) 29, 343, 424, 488, 949
BccI CCATC 3 cut(s) 70, 393, 820
BciT130I CCWGG 1 cut(s) 925
BciVI GTATCC 1 cut(s) 250
BclI TGATCA 2 cut(s) 490, 883
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 2 cut(s) 734, 752
BfuAI ACCTGC 1 cut(s) 668
BfuI GTATCC 1 cut(s) 250
BglII AGATCT 1 cut(s) 131
BisI GCNGC 6 cut(s) 43, 56, 357, 438, 502, 938
BlsI GCNGC 6 cut(s) 44, 57, 358, 439, 503, 939
Bme1390I CCNGG 1 cut(s) 925
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 829
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 925
BmsI GCATC 2 cut(s) 521, 954
BpuEI CTTGAG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 310, 924
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 3 cut(s) 432, 620, 823
Bse8I GATNNNNATC 1 cut(s) 31
BseBI CCWGG 1 cut(s) 925
BseCI ATCGAT 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 310, 924
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 90, 225
BseNI ACTGG 3 cut(s) 432, 620, 823
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 5 cut(s) 29, 343, 424, 488, 949
BshFI GGCC 3 cut(s) 55, 643, 830
BshVI ATCGAT 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 394, 559
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 3 cut(s) 55, 643, 830
Bsp1286I GDGCHC 2 cut(s) 394, 559
Bsp1407I TGTACA 2 cut(s) 294, 838
Bsp143I GATC 6 cut(s) 26, 36, 131, 262, 490, 883
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 55, 643, 830
BspCNI CTCAG 2 cut(s) 91, 226
BspDI ATCGAT 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 668
BsrGI TGTACA 2 cut(s) 294, 838
BsrI ACTGG 3 cut(s) 432, 620, 823
BssECI CCNNGG 2 cut(s) 310, 924
BssMI GATC 6 cut(s) 26, 36, 131, 262, 490, 883
Bst2UI CCWGG 1 cut(s) 925
Bst4CI ACNGT 2 cut(s) 73, 794
Bst6I CTCTTC 2 cut(s) 426, 751
BstAUI TGTACA 2 cut(s) 294, 838
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 99, 234, 608
BstDSI CCRYGG 1 cut(s) 310
BstKTI GATC 6 cut(s) 29, 39, 134, 265, 493, 886
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 6 cut(s) 26, 36, 131, 262, 490, 883
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 1 cut(s) 925
BstNSI RCATGY 1 cut(s) 971
BstSCI CCNGG 1 cut(s) 923
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 5 cut(s) 29, 343, 424, 488, 949
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 35
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 55, 643, 830
BsuTUI ATCGAT 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 500
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 1 cut(s) 506
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 829
ClaI ATCGAT 1 cut(s) 35
Csp6I GTAC 3 cut(s) 269, 295, 839
CviAII CATG 7 cut(s) 90, 170, 244, 266, 488, 538, 968
CviQI GTAC 3 cut(s) 269, 295, 839
DdeI CTNAG 3 cut(s) 99, 234, 608
DpnI GATC 6 cut(s) 28, 38, 133, 264, 492, 885
DpnII GATC 6 cut(s) 26, 36, 131, 262, 490, 883
DriI GACNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 426, 751
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 2 cut(s) 426, 751
Ecl136II GAGCTC 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 923
EcoT22I ATGCAT 1 cut(s) 969
EcoT38I GRGCYC 1 cut(s) 559
FaeI CATG 7 cut(s) 93, 173, 247, 269, 491, 541, 971
FaqI GGGAC 1 cut(s) 158
FatI CATG 7 cut(s) 89, 169, 243, 265, 487, 537, 967
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 2 cut(s) 490, 883
Fnu4HI GCNGC 6 cut(s) 43, 56, 357, 438, 502, 938
FriOI GRGCYC 1 cut(s) 559
Fsp4HI GCNGC 6 cut(s) 43, 56, 357, 438, 502, 938
FspBI CTAG 2 cut(s) 734, 752
GluI GCNGC 6 cut(s) 43, 56, 357, 438, 502, 938
HaeIII GGCC 3 cut(s) 55, 643, 830
Hin1II CATG 7 cut(s) 93, 173, 247, 269, 491, 541, 971
HinfI GANTC 2 cut(s) 302, 730
Hpy166II GTNNAC 3 cut(s) 76, 392, 839
Hpy188I TCNGA 7 cut(s) 67, 100, 333, 472, 790, 825, 963
Hpy188III TCNNGA 2 cut(s) 250, 483
Hpy8I GTNNAC 3 cut(s) 76, 392, 839
HpyCH4III ACNGT 2 cut(s) 73, 794
HpyCH4V TGCA 4 cut(s) 45, 392, 504, 967
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 3 cut(s) 99, 234, 608
Hsp92II CATG 7 cut(s) 93, 173, 247, 269, 491, 541, 971
Ksp22I TGATCA 2 cut(s) 490, 883
Kzo9I GATC 6 cut(s) 26, 36, 131, 262, 490, 883
Lsp1109I GCAGC 5 cut(s) 29, 343, 424, 488, 949
LweI GCATC 2 cut(s) 521, 954
MaeI CTAG 2 cut(s) 734, 752
MalI GATC 6 cut(s) 28, 38, 133, 264, 492, 885
MboI GATC 6 cut(s) 26, 36, 131, 262, 490, 883
MboII GAAGA 5 cut(s) 265, 443, 593, 768, 881
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 394, 559
MluCI AATT 9 cut(s) 194, 256, 373, 406, 464, 545, 597, 811, 901
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 6 cut(s) 94, 149, 229, 427, 718, 861
Mph1103I ATGCAT 1 cut(s) 969
MseI TTAA 3 cut(s) 219, 476, 575
MslI CAYNNNNRTG 3 cut(s) 397, 725, 879
MspA1I CMGCKG 2 cut(s) 42, 356
MspR9I CCNGG 1 cut(s) 925
MvaI CCWGG 1 cut(s) 925
MwoI GCNNNNNNNGC 1 cut(s) 704
NdeI CATATG 1 cut(s) 880
NdeII GATC 6 cut(s) 26, 36, 131, 262, 490, 883
NlaIII CATG 7 cut(s) 93, 173, 247, 269, 491, 541, 971
NlaIV GGNNCC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 969
NspI RCATGY 1 cut(s) 971
OliI CACNNNNGTG 1 cut(s) 725
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 6 cut(s) 44, 57, 358, 439, 503, 939
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 923
PspGI CCWGG 1 cut(s) 923
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 42, 356
RsaI GTAC 3 cut(s) 270, 296, 840
RsaNI GTAC 3 cut(s) 269, 295, 839
RseI CAYNNNNRTG 3 cut(s) 397, 725, 879
SacI GAGCTC 1 cut(s) 559
SaqAI TTAA 3 cut(s) 219, 476, 575
SatI GCNGC 6 cut(s) 43, 56, 357, 438, 502, 938
Sau3AI GATC 6 cut(s) 26, 36, 131, 262, 490, 883
Sau96I GGNCC 1 cut(s) 829
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 1 cut(s) 925
SduI GDGCHC 2 cut(s) 394, 559
SfaNI GCATC 2 cut(s) 521, 954
SmiMI CAYNNNNRTG 3 cut(s) 397, 725, 879
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 9 cut(s) 194, 256, 373, 406, 464, 545, 597, 811, 901
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 734, 752
SstI GAGCTC 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 923
TaaI ACNGT 2 cut(s) 73, 794
TaqI TCGA 3 cut(s) 29, 35, 807
TasI AATT 9 cut(s) 194, 256, 373, 406, 464, 545, 597, 811, 901
TatI WGTACW 2 cut(s) 294, 838
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 219, 476, 575
Tru9I TTAA 3 cut(s) 219, 476, 575
TscAI CASTG 1 cut(s) 500
TseI GCWGC 5 cut(s) 42, 356, 437, 501, 937
TspDTI ATGAA 7 cut(s) 110, 207, 428, 526, 582, 854, 881
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 390
XapI RAATTY 4 cut(s) 194, 464, 545, 901
XceI RCATGY 1 cut(s) 971
XspI CTAG 2 cut(s) 734, 752
Zsp2I ATGCAT 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.