Rw2G016160

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002304
Physical Location & Seq
Forward (+)
18904828 .. 18908870
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016160.1

Sequence Viewer

Length: 663 bp
ATGCGTTATGTCTATGGTATACACACAACGGTGTTTCACCGTTGTTGGAGTGTCCTCATCACACAACATCGAGATAGACGACAGACATGGTCCAAATCACACAACAGATTTCCACCGTTGTTAGAACTTGATTATGTGAGTCGGCTATTTTTGAGATCACATTCTACTTTATTAACTAGTATAGTAATTACTACAAGTACGTCGGCAGGCTTAGATCAGATTTTACCATGGATGTTTTATCACAAGGTTATTGGAGTTTCACCTTTTTTCTTTTTGTGGAAGGAAAGGCTGTGTCTCCTGAAGTATCCAAAGTTCTGGATAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGTCAGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCATTGCTGCTTGATGTGCCTGGGAATGTGGATATGGCCCGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTATATTTTTCTGGTCCACATCTAGTTTCATGTTCACTCATAATTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

220

Amino Acids

26.48

Weight (kDa)

8.96

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 19
AciI CCGC 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 199
AhlI ACTAGT 1 cut(s) 176
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 346, 362, 427
AluI AGCT 3 cut(s) 346, 362, 427
Alw21I GWGCWC 2 cut(s) 348, 588
Alw26I GTCTC 2 cut(s) 299, 377
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 564
ApeKI GCWGC 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 90, 565, 624
AsuHPI GGTGA 2 cut(s) 29, 252
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 2 cut(s) 90, 624
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 2 cut(s) 348, 588
BbvI GCAGC 1 cut(s) 522
BccI CCATC 2 cut(s) 451, 591
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 299, 377
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 3 cut(s) 177, 363, 633
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 2 cut(s) 90, 624
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 90, 565, 624
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 227, 548
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 530
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 227, 548
BseGI GGATG 2 cut(s) 237, 484
BseMI GCAATG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 522
BshFI GGCC 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 348, 588
BsiHKCI CYCGRG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 299, 377
BsnI GGCC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 348, 588
Bsp143I GATC 2 cut(s) 155, 214
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 1 cut(s) 609
BspANI GGCC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 530
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 227, 548
BssMI GATC 2 cut(s) 155, 214
BssNAI GTATAC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 227
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 31, 41, 117
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 237, 484
BstKTI GATC 2 cut(s) 158, 217
BstMAI GTCTC 2 cut(s) 299, 377
BstMBI GATC 2 cut(s) 155, 214
BstMWI GCNNNNNNNGC 3 cut(s) 352, 479, 544
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 522
BstXI CCANNNNNNTGG 1 cut(s) 315
BstZ17I GTATAC 1 cut(s) 20
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 566
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 2 cut(s) 237, 484
Cac8I GCNNGC 1 cut(s) 208
Cfr13I GGNCC 3 cut(s) 90, 565, 624
Csp6I GTAC 1 cut(s) 198
CviAII CATG 5 cut(s) 87, 228, 387, 414, 640
CviJI RGCY 9 cut(s) 145, 210, 289, 346, 362, 391, 427, 461, 566
CviKI_1 RGCY 9 cut(s) 145, 210, 289, 346, 362, 391, 427, 461, 566
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 211
DpnI GATC 2 cut(s) 157, 216
DpnII GATC 2 cut(s) 155, 214
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 2 cut(s) 90, 624
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 5 cut(s) 90, 231, 390, 417, 643
FatI CATG 5 cut(s) 86, 227, 386, 413, 639
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 2 cut(s) 244, 491
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 3 cut(s) 177, 363, 633
GluI GCNGC 1 cut(s) 536
HaeIII GGCC 1 cut(s) 566
Hin1II CATG 5 cut(s) 90, 231, 390, 417, 643
HinfI GANTC 1 cut(s) 139
HphI GGTGA 2 cut(s) 29, 252
Hpy166II GTNNAC 3 cut(s) 20, 627, 645
Hpy188I TCNGA 3 cut(s) 219, 372, 574
Hpy188III TCNNGA 4 cut(s) 71, 298, 316, 506
Hpy8I GTNNAC 3 cut(s) 20, 627, 645
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 31, 41, 117
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 479, 544
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 5 cut(s) 90, 231, 390, 417, 643
Kzo9I GATC 2 cut(s) 155, 214
LmnI GCTCC 2 cut(s) 343, 352
LpnPI CCDG 8 cut(s) 192, 301, 311, 468, 478, 534, 561, 607
Lsp1109I GCAGC 1 cut(s) 522
LweI GCATC 1 cut(s) 469
MaeI CTAG 3 cut(s) 177, 363, 633
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 519
MalI GATC 2 cut(s) 157, 216
MboI GATC 2 cut(s) 155, 214
MhlI GDGCHC 2 cut(s) 348, 588
MluCI AATT 4 cut(s) 186, 323, 418, 652
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 2 cut(s) 65, 343
MseI TTAA 2 cut(s) 173, 579
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 352, 479, 544
NcoI CCATGG 1 cut(s) 227
NdeII GATC 2 cut(s) 155, 214
NlaIII CATG 5 cut(s) 90, 231, 390, 417, 643
OliI CACNNNNGTG 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspPI GGNCC 3 cut(s) 90, 565, 624
PspXI VCTCGAGB 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 296, 328
PsyI GACNNNGTC 1 cut(s) 88
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 173, 579
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 2 cut(s) 155, 214
Sau96I GGNCC 3 cut(s) 90, 565, 624
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 2 cut(s) 348, 588
SetI ASST 6 cut(s) 203, 249, 265, 348, 364, 429
SfaNI GCATC 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 2 cut(s) 90, 624
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 4 cut(s) 186, 323, 418, 652
SsiI CCGC 1 cut(s) 609
SspMI CTAG 3 cut(s) 177, 363, 633
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 3 cut(s) 31, 41, 117
TaiI ACGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 70, 348
TasI AATT 4 cut(s) 186, 323, 418, 652
Tru1I TTAA 2 cut(s) 173, 579
Tru9I TTAA 2 cut(s) 173, 579
TseI GCWGC 1 cut(s) 535
TspDTI ATGAA 2 cut(s) 491, 628
Tth111I GACNNNGTC 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 90, 624
XhoI CTCGAG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 3 cut(s) 177, 363, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.