RchiOBHm_Chr2g0129781

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002304
Physical Location & Seq
Forward (+)
45644271 .. 45647448
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50139

Sequence Viewer

Length: 390 bp
ATGTTTTATCACAAGGTTATTGGAGTTTCCACCTTTTTTCTTTTTGTGGAAGGAAAGGCTGCGTCTCCTGAAGTATCCAAAGTTCTGGAGTCTATAACTGGAGTAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGTCAGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGCAGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

5.13

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
AasI GACNNNNNNGTC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 90
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 4 cut(s) 130, 146, 211, 317
AluI AGCT 4 cut(s) 130, 146, 211, 317
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 69, 161
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 59, 349
AvaI CYCGRG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 46, 336
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 69, 161
BfaI CTAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 371
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 2 cut(s) 60, 350
BlsI GCNGC 2 cut(s) 61, 351
Bme1390I CCNGG 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 253
BpmI CTGGAG 2 cut(s) 107, 120
BsaJI CCNNGG 2 cut(s) 324, 362
Bse1I ACTGG 2 cut(s) 103, 281
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 324, 362
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 103, 281
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 46, 336
BseYI CCCAGC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 69, 161
BsmBI CGTCTC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 2 cut(s) 103, 281
BssECI CCNNGG 2 cut(s) 324, 362
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 363
BstAPI GCANNNNNTGC 2 cut(s) 263, 349
BstF5I GGATG 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 69, 161
BstMWI GCNNNNNNNGC 4 cut(s) 136, 263, 349, 358
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 46, 336
BstXI CCANNNNNNTGG 1 cut(s) 85
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 268
BveI ACCTGC 1 cut(s) 371
CaiI CAGNNNCTG 1 cut(s) 349
CseI GACGC 1 cut(s) 51
CviAII CATG 2 cut(s) 171, 198
CviJI RGCY 7 cut(s) 59, 130, 146, 175, 211, 245, 317
CviKI_1 RGCY 7 cut(s) 59, 130, 146, 175, 211, 245, 317
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 174, 201
FaiI YATR 8 cut(s) 95, 115, 172, 199, 207, 236, 254, 377
FatI CATG 2 cut(s) 170, 197
Fnu4HI GCNGC 2 cut(s) 60, 350
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 60, 350
FspBI CTAG 1 cut(s) 147
GluI GCNGC 2 cut(s) 60, 350
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 2 cut(s) 107, 120
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 174, 201
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 68, 86, 290
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 263, 349, 358
Hsp92II CATG 2 cut(s) 174, 201
LmnI GCTCC 2 cut(s) 127, 136
Lsp1109I GCAGC 2 cut(s) 46, 336
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 107, 202
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 2 cut(s) 127, 333
MseI TTAA 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 136, 263, 349, 358
NlaIII CATG 2 cut(s) 174, 201
NlaIV GGNNCC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 61, 351
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 131
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PstNI CAGNNNCTG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 388
SatI GCNGC 2 cut(s) 60, 350
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 132
SetI ASST 7 cut(s) 18, 35, 132, 148, 213, 319, 385
SfaNI GCATC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 107, 202
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 107, 202
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TseI GCWGC 2 cut(s) 59, 349
TspDTI ATGAA 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.