RchiOBHm_Chr1g0316351

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002304
Physical Location & Seq
Forward (+)
3659120 .. 3659465
346 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54678

Sequence Viewer

Length: 156 bp
ATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTAAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGCAGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

51

Amino Acids

5.58

Weight (kDa)

4.3

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 86
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 90, 128
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 90, 128
BseGI GGATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 90, 128
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 129
BstAPI GCANNNNNTGC 2 cut(s) 29, 115
BstF5I GGATG 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 29, 115, 124
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 137
CaiI CAGNNNCTG 1 cut(s) 115
CviJI RGCY 2 cut(s) 11, 83
CviKI_1 RGCY 2 cut(s) 11, 83
Eco130I CCWWGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaiI YATR 2 cut(s) 20, 143
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsaI CCCAGC 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 115, 124
LpnPI CCDG 7 cut(s) 18, 28, 69, 93, 114, 132, 141
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 69
MseI TTAA 2 cut(s) 104, 154
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 29, 115, 124
NlaIV GGNNCC 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 104, 154
SatI GCNGC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 129
SetI ASST 2 cut(s) 85, 151
SfaNI GCATC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 90
Tru1I TTAA 2 cut(s) 104, 154
Tru9I TTAA 2 cut(s) 104, 154
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.