Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002304

Physical Location & Seq

Genomic Coordinates Forward (+)

12656310 .. 12656739

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAAACCCCAAAGTACAGTAATTTTGTATTGAAAAGAGCACTTCTTTTTTATTTATTGATTATAGTAATCATTTTTCTCGCAATTCCTTTTAGTGAGATCAGACTGGAAGAGGCTGCTGTTCCACACTACATATATGCCAAATTTTCGGACTTAATGTCAAGACATGATCAGTGTGGCTGCAAGCCTACAAGAGAATATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTGTGAGTTCAATGCGTTCTTTAAGTCCTTTGTTTATCTCTTTAGCTTTTACAGCCTTATCGTGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92

Protein Analysis

101

Amino Acids

11.72

Weight (kDa)

9.21

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08550
fragaria_vesca	FvH4_7g02090
malus_domestica	MD02G1296800.v1.1 MD07G1027100.v1.1
prunus_persica	Prupe.2G027600_v2.0.a1
pyrus_communis	pycom02g25000 pycom07g02090
rosa_chinensis	RchiOBHm_Chr1g0316351 RchiOBHm_Chr1g0319411 RchiOBHm_Chr1g0325671 RchiOBHm_Chr2g0129781 RchiOBHm_Chr5g0068801 RchiOBHm_Chr6g0245671 RchiOBHm_Chr7g0241271
rosa_laevigata	RLG00000030486 RLG00000030487 RLG00000034695
rosa_multiflora	Rmu_co8159340.1_g000001 Rmu_sc0006930.1_g000001 Rmu_sc0009208.1_g000025
rosa_roxburghii	Rroxscaffold_4G00328490 Rroxscaffold_5G00332930
rosa_rugosa	Rorug01G0027500 Rorug01G0027600 Rorug01G0027700 Rorug04G0157100 Rorug05G0507900
rosa_samantha	Rh1AG019800 Rh1AG039800 Rh1BG036600 Rh1CG038900 Rh1DG030900 Rh4CG067600 Rh5BG555100 Rh5CG577900 Rh6AG110800 Rh6AG176800
rosa_wichuraiana	Rw1G003180 Rw1G035870 Rw2G016160 Rw2G027780 Rw7G016140

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	143, 224
AfaI	GTAC	2 cut(s)	17, 301
AgsI	TTSAA	2 cut(s)	34, 246
AhdI	GACNNNNNGTC	1 cut(s)	157
AluBI	AGCT	2 cut(s)	236, 281
AluI	AGCT	2 cut(s)	236, 281
Alw21I	GWGCWC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	116, 180
ApoI	RAATTY	2 cut(s)	143, 224
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	103, 167
BclI	TGATCA	1 cut(s)	169
BisI	GCNGC	2 cut(s)	117, 181
BlsI	GCNGC	2 cut(s)	118, 182
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	103, 167
BsiHKAI	GWGCWC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	99, 169
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	99, 169
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	102, 172
BstMBI	GATC	2 cut(s)	99, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	103, 167
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	16, 300
CviAII	CATG	2 cut(s)	167, 217
CviJI	RGCY	6 cut(s)	116, 180, 187, 236, 281, 290
CviKI_1	RGCY	6 cut(s)	116, 180, 187, 236, 281, 290
CviQI	GTAC	2 cut(s)	16, 300
DpnI	GATC	2 cut(s)	101, 171
DpnII	GATC	2 cut(s)	99, 169
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	170, 220
FaiI	YATR	8 cut(s)	65, 134, 136, 138, 168, 201, 218, 304
FatI	CATG	2 cut(s)	166, 216
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	117, 181
Fsp4HI	GCNGC	2 cut(s)	117, 181
GluI	GCNGC	2 cut(s)	117, 181
Hin1II	CATG	2 cut(s)	170, 220
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	104, 151
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	170, 220
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	99, 169
LpnPI	CCDG	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	103, 167
LweI	GCATC	1 cut(s)	200
MalI	GATC	2 cut(s)	101, 171
MboI	GATC	2 cut(s)	99, 169
MboII	GAAGA	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	22, 84, 143, 224
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	155, 257
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	99, 169
NlaIII	CATG	2 cut(s)	170, 220
PkrI	GCNGC	2 cut(s)	118, 182
RsaI	GTAC	2 cut(s)	17, 301
RsaNI	GTAC	2 cut(s)	16, 300
SaqAI	TTAA	2 cut(s)	155, 257
SatI	GCNGC	2 cut(s)	117, 181
Sau3AI	GATC	2 cut(s)	99, 169
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	2 cut(s)	238, 283
SfaNI	GCATC	1 cut(s)	200
SgeI	CNNG	7 cut(s)	92, 119, 174, 179, 196, 204, 229
Sse9I	AATT	4 cut(s)	22, 84, 143, 224
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	4 cut(s)	22, 84, 143, 224
TatI	WGTACW	2 cut(s)	15, 299
Tru1I	TTAA	2 cut(s)	155, 257
Tru9I	TTAA	2 cut(s)	155, 257
TscAI	CASTG	1 cut(s)	179
TseI	GCWGC	2 cut(s)	116, 180
TspDTI	ATGAA	2 cut(s)	17, 205
TspRI	CASTG	1 cut(s)	179
XapI	RAATTY	2 cut(s)	143, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.