Rmu_sc0009208.1_g000025

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009208.1
OG0002304
Physical Location & Seq
Forward (+)
88010 .. 95344
7335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009208.1_g000025.1.cds

Sequence Viewer

Length: 588 bp
atggctattgttatggcaagggatgctggaatggactggattattcatcttgatactgatgagttactacacccagctggtgccaaggagtattctttgaggcagttgctgcttgatgtgcctgggaatgtggatatggttattttttcgaactatattgtggacccaaaaactggagaggagaggcatgttacaatttatgtggatgatggcatccggccaaatgcaaacacatttaaatcagatgggataacaactgcaggggaaacacacgggaactggtcggacaagaggagggagctcaaagtgaagatgataatatcgaatccgggaggagatggacggatgaggaagatgttcaattgtgcaagccttggaaagatgtatgccaaaatccggctgtgggcacaaatcagaaaaaaaattgacctatggaggcacgtgaagcgacactttgctgcaaattggaaagaaaagggtcgatcatcttcttctttgcagggaaggtggaaaattttgaaggttgaactctttgagtggcattgtgcattaaggcaagctgcggtagatgaggtatgtatttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

195

Amino Acids

22.37

Weight (kDa)

9.3

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 173
AciI CCGC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 513
AcvI CACGTG 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 173, 396, 403
AgsI TTSAA 3 cut(s) 361, 520, 527
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 3 cut(s) 77, 301, 560
AluI AGCT 3 cut(s) 77, 301, 560
Alw21I GWGCWC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 3 cut(s) 109, 458, 560
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 1 cut(s) 330
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 96, 445, 547
BccI CCATC 3 cut(s) 203, 239, 332
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 3 cut(s) 110, 459, 561
BlsI GCNGC 3 cut(s) 111, 460, 562
Bme1390I CCNGG 2 cut(s) 123, 330
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 82, 165
BmrFI CCNGG 2 cut(s) 123, 330
BmsI GCATC 2 cut(s) 13, 222
BpmI CTGGAG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 84, 122, 373
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 396, 403
Bse1I ACTGG 3 cut(s) 41, 178, 284
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 84, 122, 373
BseGI GGATG 4 cut(s) 28, 211, 213, 351
BseLI CCNNNNNNNGG 3 cut(s) 173, 396, 403
BseNI ACTGG 3 cut(s) 41, 178, 284
BseRI GAGGAG 3 cut(s) 194, 307, 348
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 3 cut(s) 96, 445, 547
BseYI CCCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 3 cut(s) 217, 329, 397
BslI CCNNNNNNNGG 3 cut(s) 173, 396, 403
BsnI GGCC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 303, 409
Bsp143I GATC 1 cut(s) 482
BspACI CCGC 1 cut(s) 563
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 82, 165
BspMAI CTGCAG 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 3 cut(s) 41, 178, 284
BssECI CCNNGG 3 cut(s) 84, 122, 373
BssMI GATC 1 cut(s) 482
BssT1I CCWWGG 2 cut(s) 84, 373
Bst2UI CCWGG 1 cut(s) 123
BstAPI GCANNNNNTGC 2 cut(s) 23, 109
BstBAI YACGTR 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 370, 558
BstF5I GGATG 4 cut(s) 28, 211, 213, 351
BstKTI GATC 1 cut(s) 485
BstMBI GATC 1 cut(s) 482
BstMWI GCNNNNNNNGC 4 cut(s) 23, 109, 118, 445
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 121, 328
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 96, 445, 547
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 28, 211, 213, 351
Cac8I GCNNGC 2 cut(s) 370, 558
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 1 cut(s) 188
CviJI RGCY 7 cut(s) 5, 77, 220, 301, 372, 400, 560
CviKI_1 RGCY 7 cut(s) 5, 77, 220, 301, 372, 400, 560
DpnI GATC 1 cut(s) 484
DpnII GATC 1 cut(s) 482
DraI TTTAAA 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 84, 373
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 301
Eco72I CACGTG 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 84, 373
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 2 cut(s) 84, 373
FaeI CATG 1 cut(s) 191
FaiI YATR 8 cut(s) 14, 137, 156, 189, 201, 387, 433, 577
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 110, 459, 561
FokI GGATG 4 cut(s) 35, 200, 218, 358
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 110, 459, 561
GluI GCNGC 3 cut(s) 110, 459, 561
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 1 cut(s) 220
HapII CCGG 3 cut(s) 217, 329, 397
Hin1II CATG 1 cut(s) 191
HinfI GANTC 1 cut(s) 325
HpaII CCGG 3 cut(s) 217, 329, 397
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 244, 286, 416
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 498, 514
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 6 cut(s) 227, 260, 368, 461, 499, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 109, 118, 445
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 1 cut(s) 482
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 3 cut(s) 96, 445, 547
LweI GCATC 2 cut(s) 13, 222
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 63, 190
MalI GATC 1 cut(s) 484
MboI GATC 1 cut(s) 482
MboII GAAGA 4 cut(s) 322, 364, 480, 483
MfeI CAATTG 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 303, 409
MluCI AATT 5 cut(s) 195, 361, 423, 463, 513
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 9 cut(s) 93, 172, 177, 285, 288, 326, 342, 429, 565
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 2 cut(s) 237, 551
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 217, 329, 397
MspR9I CCNGG 2 cut(s) 123, 330
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 23, 109, 118, 445
NciI CCSGG 1 cut(s) 330
NdeII GATC 1 cut(s) 482
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 2 cut(s) 82, 165
NspI RCATGY 1 cut(s) 191
NspV TTCGAA 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 3 cut(s) 111, 460, 562
PmaCI CACGTG 1 cut(s) 442
PmlI CACGTG 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 121
PspCI CACGTG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 82, 165
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 237, 551
SatI GCNGC 3 cut(s) 110, 459, 561
Sau3AI GATC 1 cut(s) 482
Sau96I GGNCC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 123, 330
SduI GDGCHC 2 cut(s) 303, 409
SetI ASST 8 cut(s) 79, 303, 432, 444, 509, 525, 562, 576
SfaNI GCATC 2 cut(s) 13, 222
SfcI CTRYAG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 163
SmiI ATTTAAAT 1 cut(s) 238
Sse9I AATT 5 cut(s) 195, 361, 423, 463, 513
SsiI CCGC 1 cut(s) 563
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 121, 328
StyI CCWWGG 2 cut(s) 84, 373
SwaI ATTTAAAT 1 cut(s) 238
TaiI ACGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 149, 323, 481
TasI AATT 5 cut(s) 195, 361, 423, 463, 513
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 237, 551
Tru9I TTAA 2 cut(s) 237, 551
TseI GCWGC 3 cut(s) 109, 458, 560
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.