Rroxscaffold_5G00332930

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002304
Physical Location & Seq
Forward (+)
321656 .. 326672
5017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00332930.1

Sequence Viewer

Length: 393 bp
ATGTTCAAGAAGAATTACGATCATGTACCAAAAGATACATACTTTGCAATGTACAAAGAATCAACCCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGAGAAATCAGCTGCTCAAATCCAAGATCATTTCCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACCCCAAATGAGATCAGACTGGAAGAGGCTGCTGTTCTACACTACATATATGCCAAATTTTCGGACTTAACGTCAAGACATGATCGGTGTGGCTGCAAGCCTACAAGAGAATATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTGTGAGTTCAATGCATTCTTTAAGTCCTTTGTTTATCTCTTTAGCTTTTACAGCCTTATCGTGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

130

Amino Acids

15.3

Weight (kDa)

9.06

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 230, 311
AfaI GTAC 3 cut(s) 27, 53, 388
AgsI TTSAA 2 cut(s) 7, 333
AhdI GACNNNNNGTC 1 cut(s) 244
AluBI AGCT 3 cut(s) 113, 323, 368
AluI AGCT 3 cut(s) 113, 323, 368
Alw21I GWGCWC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 147
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 3 cut(s) 113, 203, 267
ApoI RAATTY 2 cut(s) 230, 311
BaeGI GKGCMC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 100, 190, 254
BccI CCATC 1 cut(s) 150
BisI GCNGC 3 cut(s) 114, 204, 268
BlsI GCNGC 3 cut(s) 115, 205, 269
BmeRI GACNNNNNGTC 1 cut(s) 244
BmsI GCATC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 3 cut(s) 100, 190, 254
BsiHKAI GWGCWC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 2 cut(s) 51, 386
Bsp143I GATC 4 cut(s) 19, 127, 186, 256
BsrDI GCAATG 1 cut(s) 54
BsrGI TGTACA 2 cut(s) 51, 386
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 4 cut(s) 19, 127, 186, 256
Bst6I CTCTTC 1 cut(s) 192
BstAUI TGTACA 2 cut(s) 51, 386
BstC8I GCNNGC 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 67
BstKTI GATC 4 cut(s) 22, 130, 189, 259
BstMBI GATC 4 cut(s) 19, 127, 186, 256
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 100, 190, 254
BtgI CCRYGG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 26, 52, 387
CviAII CATG 3 cut(s) 23, 254, 304
CviJI RGCY 7 cut(s) 113, 203, 267, 274, 323, 368, 377
CviKI_1 RGCY 7 cut(s) 113, 203, 267, 274, 323, 368, 377
CviQI GTAC 3 cut(s) 26, 52, 387
DpnI GATC 4 cut(s) 21, 129, 188, 258
DpnII GATC 4 cut(s) 19, 127, 186, 256
DriI GACNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 192
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 3 cut(s) 26, 257, 307
FatI CATG 3 cut(s) 22, 253, 303
Fnu4HI GCNGC 3 cut(s) 114, 204, 268
Fsp4HI GCNGC 3 cut(s) 114, 204, 268
GluI GCNGC 3 cut(s) 114, 204, 268
Hin1II CATG 3 cut(s) 26, 257, 307
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 149, 387
Hpy188I TCNGA 3 cut(s) 90, 191, 238
Hpy188III TCNNGA 2 cut(s) 7, 249
Hpy8I GTNNAC 2 cut(s) 149, 387
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 47, 149, 270, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 3 cut(s) 26, 257, 307
Kzo9I GATC 4 cut(s) 19, 127, 186, 256
LpnPI CCDG 1 cut(s) 179
Lsp1109I GCAGC 3 cut(s) 100, 190, 254
LweI GCATC 1 cut(s) 287
MaeII ACGT 1 cut(s) 245
MalI GATC 4 cut(s) 21, 129, 188, 258
MboI GATC 4 cut(s) 19, 127, 186, 256
MboII GAAGA 2 cut(s) 22, 209
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 13, 163, 230, 311
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 2 cut(s) 242, 344
MslI CAYNNNNRTG 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 4 cut(s) 19, 127, 186, 256
NlaIII CATG 3 cut(s) 26, 257, 307
NsiI ATGCAT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 115, 205, 269
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 27, 53, 388
RsaNI GTAC 3 cut(s) 26, 52, 387
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 242, 344
SatI GCNGC 3 cut(s) 114, 204, 268
Sau3AI GATC 4 cut(s) 19, 127, 186, 256
SduI GDGCHC 1 cut(s) 151
SetI ASST 4 cut(s) 115, 248, 325, 370
SfaNI GCATC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 4 cut(s) 13, 163, 230, 311
TaiI ACGT 1 cut(s) 248
TasI AATT 4 cut(s) 13, 163, 230, 311
TatI WGTACW 2 cut(s) 51, 386
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 242, 344
Tru9I TTAA 2 cut(s) 242, 344
TseI GCWGC 3 cut(s) 113, 203, 267
TspDTI ATGAA 2 cut(s) 185, 292
TspGWI ACGGA 1 cut(s) 125
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 2 cut(s) 230, 311
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.