Rorug01G0027600

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002304
Physical Location & Seq
Forward (+)
4714157 .. 4718167
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0027600.1

Sequence Viewer

Length: 597 bp
ATGGTGTGCATACGCAAGGCCACAATGGACGACCTGCTGGCCATGCAAGCCTGCAACCTCTTCTGCCTCCCGGAAAACTACCAGATGAAGTACTACCTCTACCACATCCTCTCCTGGCCGCAGTTGCTCTACGTCGCCGAAGACTACAACGGCCGCATCGTCGGCTACGTCTTGGCCAAGATGGAGGAGGAGAGCAACGAGTGCCACGGCCACATCACCTCCCTCGCCGTCCTCCGCACCCACCGCAAACTCGGCCTCGCCACCAAGCTCATGAGCGCCGCCCAAAACGCCATGGAGCAGGTCTTCGCCGCCGAGTACGTCTCGCTTCACGTCAGGAAGAGCAACCGCGCGGCGTTCAACTTGTACACGGAGACTCTGGGGTATAAGATTCATGATGTGGAGGCTAAGTACTATGCTGATGGTGAAGATGCTTATGATATGAGGAAGGAGTTGAAGGGGAAGAAGGCGCATGCGCATGCGGGGCATGGTCATGCGCATCATGGCCATCATCACCATCACCACCACCATGAGGGCGGCTGTTGCTCCGCGCCGGCAGAGACGAAAGGCGGGGCCAAGGCGAATGCCAAGGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

198

Amino Acids

22.28

Weight (kDa)

7.76

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 21 - 128 6.4e-18 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 42 - 129 9.8e-10 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 43 - 151 2e-10 Acetyltransferase (GNAT) domain
FR47 PF08445 69 - 131 3.7e-06 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 474, 495
Acc36I ACCTGC 2 cut(s) 42, 289
AccII CGCG 3 cut(s) 348, 350, 548
AcoI YGGCCR 6 cut(s) 39, 116, 151, 174, 208, 502
AfaI GTAC 4 cut(s) 92, 317, 365, 410
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 2 cut(s) 358, 454
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 325, 365, 551
AoxI GGCC 9 cut(s) 18, 39, 116, 151, 174, 208, 253, 502, 570
AspLEI GCGC 6 cut(s) 278, 350, 469, 475, 496, 550
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 208, 434, 503, 509
BalI TGGCCA 3 cut(s) 41, 176, 504
BbsI GAAGAC 2 cut(s) 147, 295
BccI CCATC 4 cut(s) 175, 413, 513, 522
BceAI ACGGC 3 cut(s) 166, 212, 223
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 325, 365, 551
BfoI RGCGCY 1 cut(s) 279
BfuAI ACCTGC 2 cut(s) 42, 289
BisI GCNGC 6 cut(s) 119, 154, 279, 309, 351, 535
BlsI GCNGC 6 cut(s) 120, 155, 280, 310, 352, 536
BmcAI AGTACT 2 cut(s) 92, 410
Bme1390I CCNGG 2 cut(s) 71, 115
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 2 cut(s) 71, 115
BmsI GCATC 3 cut(s) 165, 418, 505
BpiI GAAGAC 2 cut(s) 147, 295
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 4 cut(s) 205, 291, 573, 585
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 203, 233, 392, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 550
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 4 cut(s) 205, 291, 573, 585
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 529
BseRI GAGGAG 2 cut(s) 200, 203
BseX3I CGGCCG 1 cut(s) 151
Bsh1236I CGCG 3 cut(s) 348, 350, 548
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 9 cut(s) 20, 41, 118, 153, 176, 210, 255, 504, 572
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 2 cut(s) 71, 551
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 3 cut(s) 325, 365, 551
BsmBI CGTCTC 2 cut(s) 325, 551
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 9 cut(s) 20, 41, 118, 153, 176, 210, 255, 504, 572
Bsp1407I TGTACA 1 cut(s) 363
Bsp19I CCATGG 1 cut(s) 291
BspANI GGCC 9 cut(s) 20, 41, 118, 153, 176, 210, 255, 504, 572
BspFNI CGCG 3 cut(s) 348, 350, 548
BspHI TCATGA 2 cut(s) 270, 391
BspLI GGNNCC 1 cut(s) 571
BspMI ACCTGC 2 cut(s) 42, 289
BspQI GCTCTTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 550
BsrGI TGTACA 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 205, 291, 573, 585
BssT1I CCWWGG 3 cut(s) 291, 573, 585
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 2 cut(s) 65, 332
BstAPI GCANNNNNTGC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 6 cut(s) 39, 48, 52, 471, 477, 552
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 2 cut(s) 205, 291
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 3 cut(s) 348, 350, 548
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 6 cut(s) 278, 350, 469, 475, 496, 550
BstMAI GTCTC 3 cut(s) 325, 365, 551
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 2 cut(s) 473, 479
BstSCI CCNGG 2 cut(s) 69, 113
BstUI CGCG 3 cut(s) 348, 350, 548
BstV2I GAAGAC 2 cut(s) 147, 295
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 9 cut(s) 20, 41, 118, 153, 176, 210, 255, 504, 572
BtgI CCRYGG 2 cut(s) 205, 291
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 105
BveI ACCTGC 2 cut(s) 42, 289
Cac8I GCNNGC 6 cut(s) 39, 48, 52, 471, 477, 552
CciI TCATGA 2 cut(s) 270, 391
CfoI GCGC 6 cut(s) 278, 350, 469, 475, 496, 550
Cfr10I RCCGGY 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 570
Csp6I GTAC 4 cut(s) 91, 316, 364, 409
CviQI GTAC 4 cut(s) 91, 316, 364, 409
DdeI CTNAG 1 cut(s) 405
EaeI YGGCCR 6 cut(s) 39, 116, 151, 174, 208, 502
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 65, 332
EarI CTCTTC 2 cut(s) 65, 332
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 291, 573, 585
Eco52I CGGCCG 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 291, 573, 585
ErhI CCWWGG 3 cut(s) 291, 573, 585
Esp3I CGTCTC 2 cut(s) 325, 551
FauI CCCGC 2 cut(s) 472, 560
Fnu4HI GCNGC 6 cut(s) 119, 154, 279, 309, 351, 535
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 119, 154, 279, 309, 351, 535
FspAI RTGCGCAY 2 cut(s) 474, 495
FspI TGCGCA 2 cut(s) 474, 495
GlaI GCGC 6 cut(s) 277, 349, 468, 474, 495, 549
GluI GCNGC 6 cut(s) 119, 154, 279, 309, 351, 535
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 9 cut(s) 20, 41, 118, 153, 176, 210, 255, 504, 572
HapII CCGG 2 cut(s) 71, 551
HhaI GCGC 6 cut(s) 278, 350, 469, 475, 496, 550
Hin6I GCGC 6 cut(s) 276, 348, 467, 473, 494, 548
HinP1I GCGC 6 cut(s) 276, 348, 467, 473, 494, 548
HinfI GANTC 2 cut(s) 373, 388
HpaII CCGG 2 cut(s) 71, 551
HphI GGTGA 4 cut(s) 208, 434, 503, 509
Hpy166II GTNNAC 1 cut(s) 366
Hpy188III TCNNGA 3 cut(s) 271, 334, 392
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 2 cut(s) 137, 164
HpyAV CCTTC 3 cut(s) 439, 448, 457
HpyCH4IV ACGT 4 cut(s) 132, 168, 318, 330
HpyCH4V TGCA 3 cut(s) 9, 46, 54
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 4 cut(s) 132, 168, 318, 330
HspAI GCGC 6 cut(s) 276, 348, 467, 473, 494, 548
KroI GCCGGC 1 cut(s) 550
KroNI GCCGGC 1 cut(s) 552
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 2 cut(s) 295, 548
LweI GCATC 3 cut(s) 165, 418, 505
MaeII ACGT 4 cut(s) 132, 168, 318, 330
MboII GAAGA 6 cut(s) 52, 152, 295, 349, 437, 472
MlsI TGGCCA 3 cut(s) 41, 176, 504
MluNI TGGCCA 3 cut(s) 41, 176, 504
MlyI GAGTC 1 cut(s) 367
Mox20I TGGCCA 3 cut(s) 41, 176, 504
MroNI GCCGGC 1 cut(s) 550
MscI TGGCCA 3 cut(s) 41, 176, 504
MslI CAYNNNNRTG 3 cut(s) 474, 489, 525
Msp20I TGGCCA 3 cut(s) 41, 176, 504
MspI CCGG 2 cut(s) 71, 551
MspR9I CCNGG 2 cut(s) 71, 115
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 3 cut(s) 348, 350, 548
NaeI GCCGGC 1 cut(s) 552
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 291
NgoMIV GCCGGC 1 cut(s) 550
NlaIV GGNNCC 1 cut(s) 571
NmeAIII GCCGAG 2 cut(s) 231, 337
NsbI TGCGCA 2 cut(s) 474, 495
NspI RCATGY 2 cut(s) 473, 479
PaeI GCATGC 2 cut(s) 473, 479
PagI TCATGA 2 cut(s) 270, 391
PciSI GCTCTTC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 165
PctI GAATGC 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 6 cut(s) 120, 155, 280, 310, 352, 536
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 570
RsaI GTAC 4 cut(s) 92, 317, 365, 410
RsaNI GTAC 4 cut(s) 91, 316, 364, 409
RseI CAYNNNNRTG 3 cut(s) 474, 489, 525
SapI GCTCTTC 1 cut(s) 332
SatI GCNGC 6 cut(s) 119, 154, 279, 309, 351, 535
Sau96I GGNCC 1 cut(s) 570
ScaI AGTACT 2 cut(s) 92, 410
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 71, 115
SfaNI GCATC 3 cut(s) 165, 418, 505
SmiMI CAYNNNNRTG 3 cut(s) 474, 489, 525
SphI GCATGC 2 cut(s) 473, 479
StyD4I CCNGG 2 cut(s) 69, 113
StyI CCWWGG 3 cut(s) 291, 573, 585
TaiI ACGT 4 cut(s) 135, 171, 321, 333
TatI WGTACW 3 cut(s) 90, 363, 408
TauI GCSGC 6 cut(s) 121, 156, 281, 311, 353, 537
TfiI GAWTC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 101, 380
TspGWI ACGGA 1 cut(s) 383
XceI RCATGY 2 cut(s) 473, 479
ZrmI AGTACT 2 cut(s) 92, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.