Rh5CG577900

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002304
Physical Location & Seq
Forward (+)
81961287 .. 81962897
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG577900.1

Sequence Viewer

Length: 366 bp
ATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGTAAGTGAATTTGTAGTGGTACTTTTAAACATTGTGGTAGGCAGGTGGTTAAACTTAATTGCACATGCTAGTTTTGTACTTTTACCTGTCTCTTGTTTCAACCCTGATGCTTGTTATTCGGTAAATGTAATTAACGTTGATATTTTGTTGAGTAGGAGAGAAGTGTTGAACGAGATGATATTAAGGAACCTTTTACCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

4.79

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 86
AclI AACGTT 1 cut(s) 297
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 2 cut(s) 183, 240
AgsI TTSAA 2 cut(s) 262, 331
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 195
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 88, 350
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 19, 259
Bpu14I TTCGAA 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 90, 128, 359
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 90, 128, 359
BseGI GGATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 88, 350
BspMI ACCTGC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 90, 128, 359
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 129
BstAPI GCANNNNNTGC 2 cut(s) 29, 115
BstBI TTCGAA 1 cut(s) 155
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 256
BstMWI GCNNNNNNNGC 3 cut(s) 29, 115, 124
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 115
Csp6I GTAC 2 cut(s) 182, 239
CviAII CATG 1 cut(s) 227
CviJI RGCY 2 cut(s) 11, 83
CviKI_1 RGCY 2 cut(s) 11, 83
CviQI GTAC 2 cut(s) 182, 239
DraI TTTAAA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 230
FaiI YATR 4 cut(s) 20, 143, 162, 228
FatI CATG 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 231
GluI GCNGC 1 cut(s) 116
GsaI CCCAGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 115, 124
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 230
LpnPI CCDG 9 cut(s) 18, 28, 69, 93, 114, 141, 190, 261, 279
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 2 cut(s) 19, 259
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 69
MluCI AATT 3 cut(s) 170, 219, 291
MnlI CCTC 2 cut(s) 99, 354
MseI TTAA 5 cut(s) 188, 212, 218, 294, 344
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 29, 115, 124
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 88, 350
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 88, 350
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 183, 240
RsaNI GTAC 2 cut(s) 182, 239
SaqAI TTAA 5 cut(s) 188, 212, 218, 294, 344
SatI GCNGC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 129
SetI ASST 6 cut(s) 85, 209, 250, 300, 354, 365
SfaNI GCATC 2 cut(s) 19, 259
SfuI TTCGAA 1 cut(s) 155
Sse9I AATT 3 cut(s) 170, 219, 291
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 155
TasI AATT 3 cut(s) 170, 219, 291
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 5 cut(s) 188, 212, 218, 294, 344
Tru9I TTAA 5 cut(s) 188, 212, 218, 294, 344
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 41
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 230
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.