Rh6AG110800

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002304
Physical Location & Seq
Forward (+)
16189865 .. 16193679
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG110800.1

Sequence Viewer

Length: 801 bp
ATGCTTCTTGTTTTTGGTACCATCAGTCAGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGAAATGACAGACATGAGAGATAAGAGTGTGAAGAGAGGAATGAAAAGATTATCAGAGCAGTCAGCTGCTGAAATGAGTGGATTTGATCGTGTTAGGTCTAAGAGGTGGACAACAATGTTTGATCAGCGAATTGTTGGAACATCAAGTCAACCTGAAAATGTAGATGCATCTGAACACAGTGAGAATGAAGTTAGGGGTGGTGATGAAAATACCATTGCAGGTGTAAATGCATTTGACGCTGCAGAGATTACACGAAGTAGCACGATGAGAAGAATGAAAAGATTGTTACAACAATGTGCTACTGAAAATTATGAAATTGGAGGGACAGTTGACCAAGGAAGAGCTGAATCCAATTGCATGTTGAGAATGAAGACATTGTCAGACCAGTCTGCTGTTGAAAATTCTGAAAGTGGAAACAAAGTTCATCAACGAAGAAGTGAATTTAATCCTGTGAGATCTAAGAGGTGGAGAAGAATGTTTGATTCACACATTGGTGAAGGATCAAGTCAACGTCAAAATCTGGATGCAGCTGAATATAGTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

266

Amino Acids

30.4

Weight (kDa)

5.41

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
AasI GACNNNNNNGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 17, 194
AclWI GGATC 1 cut(s) 760
AcsI RAATTY 2 cut(s) 652, 692
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 650
AjnI CCWGG 1 cut(s) 235
AleI CACNNNNGTG 1 cut(s) 744
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
AluBI AGCT 5 cut(s) 85, 191, 317, 596, 782
AluI AGCT 5 cut(s) 85, 191, 317, 596, 782
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 760
AlwNI CAGNNNCTG 2 cut(s) 223, 320
ApeKI GCWGC 4 cut(s) 223, 317, 491, 779
ApoI RAATTY 2 cut(s) 652, 692
Asp718I GGTACC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 464, 758
BanI GGYRCC 2 cut(s) 17, 194
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 210, 304, 478, 791
BccI CCATC 2 cut(s) 29, 109
BciT130I CCWGG 1 cut(s) 237
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 707
BisI GCNGC 4 cut(s) 224, 318, 492, 780
BlsI GCNGC 4 cut(s) 225, 319, 493, 781
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 19, 196
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 4 cut(s) 127, 406, 428, 766
BpiI GAAGAC 1 cut(s) 629
BsaJI CCNNGG 3 cut(s) 198, 236, 586
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bse1I ACTGG 2 cut(s) 155, 637
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 198, 236, 586
BseGI GGATG 2 cut(s) 142, 781
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 155, 637
BseXI GCAGC 4 cut(s) 210, 304, 478, 791
BseYI CCCAGC 1 cut(s) 187
BshNI GGYRCC 2 cut(s) 17, 194
BslFI GGGAC 1 cut(s) 589
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 589
Bsp143I GATC 4 cut(s) 337, 373, 707, 752
BspLI GGNNCC 2 cut(s) 19, 196
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 760
BspQI GCTCTTC 1 cut(s) 586
BspT107I GGYRCC 2 cut(s) 17, 194
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 155, 637
BssECI CCNNGG 3 cut(s) 198, 236, 586
BssMI GATC 4 cut(s) 337, 373, 707, 752
BssT1I CCWWGG 2 cut(s) 198, 586
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 431, 580
Bst6I CTCTTC 2 cut(s) 278, 586
BstAPI GCANNNNNTGC 2 cut(s) 137, 223
BstDEI CTNAG 2 cut(s) 351, 711
BstF5I GGATG 2 cut(s) 142, 781
BstKTI GATC 4 cut(s) 340, 376, 710, 755
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 4 cut(s) 337, 373, 707, 752
BstMWI GCNNNNNNNGC 4 cut(s) 137, 223, 232, 488
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 210, 304, 478, 791
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BtsCI GGATG 2 cut(s) 142, 781
BtsIMutI CAGTG 1 cut(s) 436
BveI ACCTGC 1 cut(s) 461
CaiI CAGNNNCTG 2 cut(s) 223, 320
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 18
CviAII CATG 4 cut(s) 45, 72, 265, 610
CviJI RGCY 7 cut(s) 49, 85, 119, 191, 317, 596, 782
CviKI_1 RGCY 7 cut(s) 49, 85, 119, 191, 317, 596, 782
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 351, 711
DpnI GATC 4 cut(s) 339, 375, 709, 754
DpnII GATC 4 cut(s) 337, 373, 707, 752
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 278, 586
EarI CTCTTC 2 cut(s) 278, 586
Eco130I CCWWGG 2 cut(s) 198, 586
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 198, 586
EcoT22I ATGCAT 2 cut(s) 421, 484
ErhI CCWWGG 2 cut(s) 198, 586
FaeI CATG 4 cut(s) 48, 75, 268, 613
FaqI GGGAC 1 cut(s) 589
FatI CATG 4 cut(s) 44, 71, 264, 609
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 4 cut(s) 224, 318, 492, 780
FokI GGATG 2 cut(s) 149, 788
Fsp4HI GCNGC 4 cut(s) 224, 318, 492, 780
GluI GCNGC 4 cut(s) 224, 318, 492, 780
GsaI CCCAGC 1 cut(s) 191
HgaI GACGC 1 cut(s) 497
Hin1II CATG 4 cut(s) 48, 75, 268, 613
HincII GTYRAC 3 cut(s) 401, 583, 761
HindII GTYRAC 3 cut(s) 401, 583, 761
HinfI GANTC 2 cut(s) 599, 734
HphI GGTGA 2 cut(s) 464, 758
Hpy166II GTNNAC 4 cut(s) 360, 401, 583, 761
Hpy188I TCNGA 5 cut(s) 30, 307, 424, 634, 658
Hpy188III TCNNGA 2 cut(s) 164, 773
Hpy8I GTNNAC 4 cut(s) 360, 401, 583, 761
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 2 cut(s) 431, 580
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 7 cut(s) 75, 419, 470, 482, 494, 609, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 223, 232, 488
HpyF3I CTNAG 2 cut(s) 351, 711
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 4 cut(s) 48, 75, 268, 613
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 337, 373, 707, 752
LguI GCTCTTC 1 cut(s) 586
Lsp1109I GCAGC 4 cut(s) 210, 304, 478, 791
LweI GCATC 4 cut(s) 127, 406, 428, 766
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 2 cut(s) 177, 537
MalI GATC 4 cut(s) 339, 375, 709, 754
MboI GATC 4 cut(s) 337, 373, 707, 752
MboII GAAGA 6 cut(s) 295, 534, 603, 634, 696, 735
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 707
MluCI AATT 7 cut(s) 76, 381, 559, 567, 604, 652, 692
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 207, 281, 348, 566, 708
Mph1103I ATGCAT 2 cut(s) 421, 484
MseI TTAA 2 cut(s) 696, 799
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 3 cut(s) 191, 317, 782
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 137, 223, 232, 488
NdeII GATC 4 cut(s) 337, 373, 707, 752
NlaIII CATG 4 cut(s) 48, 75, 268, 613
NlaIV GGNNCC 2 cut(s) 19, 196
NsiI ATGCAT 2 cut(s) 421, 484
NspI RCATGY 1 cut(s) 613
OliI CACNNNNGTG 1 cut(s) 744
PaqCI CACCTGC 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 599, 734
PflFI GACNNNGTC 1 cut(s) 628
PkrI GCNGC 4 cut(s) 225, 319, 493, 781
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 19, 196
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 2 cut(s) 223, 320
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 628
PvuII CAGCTG 3 cut(s) 191, 317, 782
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 744
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 2 cut(s) 696, 799
SatI GCNGC 4 cut(s) 224, 318, 492, 780
Sau3AI GATC 4 cut(s) 337, 373, 707, 752
ScrFI CCNGG 1 cut(s) 237
SfaNI GCATC 4 cut(s) 127, 406, 428, 766
SfcI CTRYAG 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 744
Sse9I AATT 7 cut(s) 76, 381, 559, 567, 604, 652, 692
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 2 cut(s) 198, 586
TaaI ACNGT 2 cut(s) 431, 580
TaiI ACGT 1 cut(s) 766
TasI AATT 7 cut(s) 76, 381, 559, 567, 604, 652, 692
TfiI GAWTC 2 cut(s) 599, 734
Tru1I TTAA 2 cut(s) 696, 799
Tru9I TTAA 2 cut(s) 696, 799
TscAI CASTG 1 cut(s) 436
TseI GCWGC 4 cut(s) 223, 317, 491, 779
TspDTI ATGAA 8 cut(s) 149, 308, 453, 471, 542, 579, 635, 665
TspRI CASTG 1 cut(s) 436
Tth111I GACNNNGTC 1 cut(s) 628
XapI RAATTY 2 cut(s) 652, 692
XceI RCATGY 1 cut(s) 613
Zsp2I ATGCAT 2 cut(s) 421, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.