Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0017069

Physical Location & Seq

Genomic Coordinates Forward (+)

17036375 .. 17038097

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGTGAGAGACTGAGTGGTACCGTCAAGTGGTTCAATGACCAGAAGGGGTTCGGCTTCATCACCCCCAACGATGGCGGCGACGATCTGTTCGTCCACCAGTCCTCGATCCGAACGGAGGGGTTTAGGACCCTCGGCGATGGCGAGTCCGTGGAGTTCCAGATCGAATCTGACAGCGATGGCCGCACCAAGGCGGTTGATGTGACAGGACCCGCCGAGGGTCCCGTTCAGGGAAGCCGTGGTGGCGGCGGTGGTGGTGGTGGTAGAGGCCGAGGTGGCGGCGGTGGGGGGTATGGGTTTAACGGTGGAGGTGGAAGAGGCGGAGGGGGTAGAGGTGGGAGAGGAGGCGGTGGCTATGGAGGTGGTGGATACGGCGGTGGCGCTGGTGGATATGGCGGCGGCGGTGGATATGGCGGAGGAGGCGGTGGTGGCGCCTGTTTCAAGTGCGGTGAGTCTGGGCATATGGCTAGGGACTGCGACCAGGGCGGATCTGGCGGCGGTTATGGCGGTGGAGGTGGCTATTCAGGTGGTGGTCGCGGAGGCGGTGGTGGTTCTTCCGGTGGCTGCTACGGATGCGGTGAGTCTGGCCATTTCGCAAGGGAGTGCCCTAACAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

207

Amino Acids

19.23

Weight (kDa)

6.29

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21060 AT4G38680
fragaria_vesca	FvH4_2g01580
malus_domestica	MD10G1121500.v1.1
prunus_persica	Prupe.8G163000_v2.0.a1
pyrus_communis	pycom05g11220
rosa_chinensis	RchiOBHm_Chr6g0244251
rosa_laevigata	RLG00000015370
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6BG018600 Rh6CG015700 Rh6DG016900
rosa_wichuraiana	Rw6G001890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	20, 431
AccII	CGCG	1 cut(s)	537
AclWI	GGATC	2 cut(s)	103, 496
AcoI	YGGCCR	2 cut(s)	181, 586
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	6 cut(s)	30, 74, 118, 190, 218, 230
AgsI	TTSAA	2 cut(s)	37, 442
AjnI	CCWGG	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	103, 496
AoxI	GGCC	3 cut(s)	181, 268, 586
ApeKI	GCWGC	1 cut(s)	564
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	383, 434
AspS9I	GGNCC	3 cut(s)	129, 209, 221
AsuHPI	GGTGA	4 cut(s)	17, 55, 461, 590
AvaII	GGWCC	3 cut(s)	129, 209, 221
BaeGI	GKGCMC	1 cut(s)	608
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BalI	TGGCCA	1 cut(s)	588
BanI	GGYRCC	2 cut(s)	20, 431
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	3 cut(s)	68, 134, 173
BceAI	ACGGC	2 cut(s)	222, 388
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	2 cut(s)	384, 435
BfuI	GTATCC	1 cut(s)	362
BglI	GCCNNNNNGGC	2 cut(s)	243, 276
BisI	GCNGC	8 cut(s)	79, 184, 247, 280, 397, 400, 496, 565
BlsI	GCNGC	8 cut(s)	80, 185, 248, 281, 398, 401, 497, 566
Bme1390I	CCNGG	1 cut(s)	482
Bme18I	GGWCC	3 cut(s)	129, 209, 221
BmgT120I	GGNCC	3 cut(s)	129, 209, 221
BmiI	GGNNCC	6 cut(s)	22, 131, 211, 222, 223, 433
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	7 cut(s)	133, 150, 189, 216, 238, 271, 481
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 74, 118, 190, 218, 230
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	7 cut(s)	133, 150, 189, 216, 238, 271, 481
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	6 cut(s)	30, 74, 118, 190, 218, 230
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	357, 432
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	3 cut(s)	183, 270, 588
BshNI	GGYRCC	2 cut(s)	20, 431
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	2 cut(s)	207, 485
BslI	CCNNNNNNNGG	6 cut(s)	30, 74, 118, 190, 218, 230
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	2 cut(s)	207, 485
BsnI	GGCC	3 cut(s)	183, 270, 588
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	85, 108, 162, 488
BspANI	GGCC	3 cut(s)	183, 270, 588
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	6 cut(s)	22, 131, 211, 222, 223, 433
BspPI	GGATC	2 cut(s)	103, 496
BspT107I	GGYRCC	2 cut(s)	20, 431
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	7 cut(s)	133, 150, 189, 216, 238, 271, 481
BssMI	GATC	4 cut(s)	85, 108, 162, 488
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	25, 305
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	14, 618
BstDSI	CCRYGG	2 cut(s)	150, 238
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	2 cut(s)	384, 435
BstHHI	GCGC	2 cut(s)	383, 434
BstKTI	GATC	4 cut(s)	88, 111, 165, 491
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	4 cut(s)	85, 108, 162, 488
BstMWI	GCNNNNNNNGC	9 cut(s)	183, 243, 276, 420, 429, 483, 492, 504, 573
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	608
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	183, 270, 588
BtgI	CCRYGG	2 cut(s)	150, 238
BtgZI	GCGATG	2 cut(s)	153, 192
BtsCI	GGATG	1 cut(s)	578
CfoI	GCGC	2 cut(s)	383, 434
Cfr13I	GGNCC	3 cut(s)	129, 209, 221
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	9 cut(s)	57, 183, 237, 270, 354, 467, 519, 564, 588
CviKI_1	RGCY	9 cut(s)	57, 183, 237, 270, 354, 467, 519, 564, 588
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	14, 618
DinI	GGCGCC	1 cut(s)	433
DpnI	GATC	4 cut(s)	87, 110, 164, 490
DpnII	GATC	4 cut(s)	85, 108, 162, 488
EaeI	YGGCCR	2 cut(s)	181, 586
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
EciI	GGCGGA	3 cut(s)	336, 429, 501
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	3 cut(s)	129, 209, 221
EcoO109I	RGGNCCY	3 cut(s)	129, 209, 221
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	189
EgeI	GGCGCC	1 cut(s)	433
EheI	GGCGCC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	189
FaiI	YATR	7 cut(s)	294, 357, 393, 411, 462, 464, 504
FaqI	GGGAC	2 cut(s)	207, 485
FauI	CCCGC	1 cut(s)	220
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	8 cut(s)	79, 184, 247, 280, 397, 400, 496, 565
FokI	GGATG	1 cut(s)	585
Fsp4HI	GCNGC	8 cut(s)	79, 184, 247, 280, 397, 400, 496, 565
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	382, 433
GluI	GCNGC	8 cut(s)	79, 184, 247, 280, 397, 400, 496, 565
HaeII	RGCGCY	2 cut(s)	384, 435
HaeIII	GGCC	3 cut(s)	183, 270, 588
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	2 cut(s)	383, 434
Hin1I	GRCGYC	1 cut(s)	432
Hin6I	GCGC	2 cut(s)	381, 432
HinP1I	GCGC	2 cut(s)	381, 432
HinfI	GANTC	4 cut(s)	146, 167, 452, 581
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	4 cut(s)	17, 55, 461, 590
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	113, 172
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	25, 305
HpyF10VI	GCNNNNNNNGC	9 cut(s)	183, 243, 276, 420, 429, 483, 492, 504, 573
HpyF3I	CTNAG	2 cut(s)	14, 618
Hsp92I	GRCGYC	1 cut(s)	432
HspAI	GCGC	2 cut(s)	381, 432
KasI	GGCGCC	1 cut(s)	431
KflI	GGGWCCC	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	85, 108, 162, 488
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	4 cut(s)	87, 110, 164, 490
MboI	GATC	4 cut(s)	85, 108, 162, 488
MboII	GAAGA	2 cut(s)	327, 546
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	588
MluNI	TGGCCA	1 cut(s)	588
Mly113I	GGCGCC	1 cut(s)	432
MlyI	GAGTC	3 cut(s)	155, 461, 590
Mox20I	TGGCCA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	588
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	588
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	9 cut(s)	183, 243, 276, 420, 429, 483, 492, 504, 573
NarI	GGCGCC	1 cut(s)	432
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	4 cut(s)	85, 108, 162, 488
NlaIV	GGNNCC	6 cut(s)	22, 131, 211, 222, 223, 433
NmeAIII	GCCGAG	3 cut(s)	114, 241, 296
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 90, 141
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	8 cut(s)	80, 185, 248, 281, 398, 401, 497, 566
PleI	GAGTC	3 cut(s)	154, 460, 589
PluTI	GGCGCC	1 cut(s)	435
PpsI	GAGTC	3 cut(s)	154, 460, 589
PpuMI	RGGWCCY	3 cut(s)	129, 209, 221
Psp5II	RGGWCCY	3 cut(s)	129, 209, 221
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	6 cut(s)	22, 131, 211, 222, 223, 433
PspPI	GGNCC	3 cut(s)	129, 209, 221
PspPPI	RGGWCCY	3 cut(s)	129, 209, 221
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	8 cut(s)	79, 184, 247, 280, 397, 400, 496, 565
Sau3AI	GATC	4 cut(s)	85, 108, 162, 488
Sau96I	GGNCC	3 cut(s)	129, 209, 221
SchI	GAGTC	3 cut(s)	155, 461, 590
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	608
SetI	ASST	7 cut(s)	277, 313, 337, 364, 517, 529, 617
SfaNI	GCATC	1 cut(s)	563
SfoI	GGCGCC	1 cut(s)	433
SinI	GGWCC	3 cut(s)	129, 209, 221
SspDI	GGCGCC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	25, 305
TaqI	TCGA	2 cut(s)	107, 165
TauI	GCSGC	7 cut(s)	81, 186, 249, 282, 399, 402, 498
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	3 cut(s)	131, 139, 585
VpaK11BI	GGWCC	3 cut(s)	129, 209, 221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.