AT2G21470

sumo-activating enzyme

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9198569 .. 9202487
3919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21470.2

Sequence Viewer

Length: 1878 bp
ATGGCTACGCAACAACAGCAATCCGCCATTAAAGGCGCGAAAGTGCTTATGGTTGGAGCTGGTGGGATTGGTTGCGAGTTACTTAAGACTCTTGCTCTTTCTGGATTCGAGGACATTCATATTATTGACATGGACACTATTGAAGTCAGTAACCTGAATAGGCAATTTCTATTCCGTCGTTCTCATGTTGGGCAGTCTAAGGCTAAGGTTGCCAGAGATGCAGTCTTGAGATTTAGGCCTAACATTAATATAAGATCATACCATGCAAATGTGAAGAATCCCGAGTTTGATGTTGATTTTTTCAAGCAATTTGATGTTGTTCTGAATGGGCTGGACAACTTGGACGCAAGGCGTCATGTGAATCGCCTTTGTCTTGCAGCTGATGTTCCTCTTGTAGAAAGTGGGACAACGGGCTTCCTTGGACAGGTAACTGTGCATATAAAGGGAAAAACAGAATGTTATGAGTGCCAAACCAAACCTGCTCCAAAGACTTATCCTGTGTGTACAATAACCAGCACGCCAACTAAGTTTGTGCACTGTATTGTATGGGCAAAAGACCTGCTCTTTGCAAAGTTGTTTGGCGACAAGAATCAAGATAATGATCTTAATGTGCGATCCAACAATTCTGCAAGCTCATCCAAAGAAACAGAAGATGTATTTGAACGTTCAGAAGATGAAGATATTGAGCAGTATGGTAGGAAGATATATGATCATGTGTTTGGTTCTAACATTGAAGCGGCTTTGTCCAATGAAGAGACATGGAAAAATCGCAGACGACCAAGGCCTATATACAGTAAGGATGTCTTGCCTGAAAGTCTGACTCAACAAAATGGAAGCACTCAGAATTGTTCTGTTACTGATGGTGATTTAATGGTCTCTGCCATGCCATCGCTTGGCCTGAAGAATCCACAGGAATTGTGGGGTCTAACGCAGAATTCTCTTGTGTTCATAGAAGCATTGAAGTTGTTCTTCGCCAAGAGAAAGAAGGAAATAGGACACCTTACTTTTGACAAAGATGATCAGTTAGCTGTAGAATTTGTTACTGCTGCTGCAAATATCCGTGCTGAGTCTTTCGGAATTCCTTTGCACAGCCTTTTTGAAGCGAAAGGTATTGCTGGAAACATTGTTCATGCTGTTGCTACGACCAACGCCATTATTGCTGGTTTAATTGTCATTGAAGCAATCAAAGTGCTGAAAAAGGATGTGGACAAGTTCAGAATGACATATTGCTTAGAACACCCAAGCAAAAAGCTGCTGCTTATGCCAATCGAGCCATATGAACCTAATCCTGCTTGCTATGTCTGTTCCGAGACCCCATTAGTACTCGAGATCAATACTCGGAAATCAAAACTACGGGATCTAGTTGATAAAATTGTGAAAACCAAGCTTGGAATGAACCTACCGTTGATTATGCACGGGAATTCGCTTCTGTATGAAGTTGGCGATGATCTTGATGATATTATGGTTGCAAACTACAACGCTAATCTTGAGAAGTATCTATCAGAACTTCCTTCTCCCATTCTTAACGGAAGCATTCTCACAGTCGAAGATCTTCAACAAGAGCTATCTTGCAAGATAAATGTCAAGCACAGGGAAGAATTTGACGAGGAAAAAGAACCTGAAGGAATGGTACTCTCTGGATGGACACCATCTCCAGCTACCAATGGCGAGAGCGCATCAACATCAAACAACGAGAACCCAGTTGATGTTACAGAGAGTTCCTCAGGATCCGAGCCTGCTTCTAAGAAGAGAAGACTCTCTGAGACCGAGGCCAGTAATCATAAGAAAGAAACAGAGAACGTCGAGAGTGAAGATGATGATATCATGGAGGTTGAAAATCCCATGATGGTGAGCAAAAAGAAGATAAGAGTTGAATAG

Protein Analysis

625

Amino Acids

69.75

Weight (kDa)

5.46

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThiF PF00899 4 - 405 3e-66 ThiF family
UAE_UbL PF14732 442 - 531 9.2e-23 Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 487, 567
AccB7I CCANNNNNTGG 1 cut(s) 893
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 24, 737
AclI AACGTT 1 cut(s) 664
AclWI GGATC 4 cut(s) 609, 1365, 1722, 1735
AcsI RAATTY 5 cut(s) 934, 1034, 1077, 1420, 1598
AcuI CTGAAG 2 cut(s) 920, 1641
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 3 cut(s) 505, 1323, 1632
AfiI CCNNNNNNNGG 2 cut(s) 424, 893
AflII CTTAAG 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 1110, 1142
AluBI AGCT 8 cut(s) 59, 380, 633, 1028, 1252, 1387, 1564, 1658
AluI AGCT 8 cut(s) 59, 380, 633, 1028, 1252, 1387, 1564, 1658
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 4 cut(s) 749, 880, 1304, 1757
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 4 cut(s) 609, 1365, 1722, 1735
Ama87I CYCGRG 2 cut(s) 281, 1325
AoxI GGCC 4 cut(s) 236, 782, 895, 1770
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 5 cut(s) 377, 1046, 1049, 1252, 1255
ApoI RAATTY 5 cut(s) 934, 1034, 1077, 1420, 1598
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AseI ATTAAT 1 cut(s) 246
Asp700I GAANNNNTTC 2 cut(s) 965, 1551
AspLEI GCGC 2 cut(s) 38, 1676
AsuHPI GGTGA 2 cut(s) 875, 1861
AvaI CYCGRG 2 cut(s) 281, 1325
AxyI CCTNAGG 1 cut(s) 1723
BaeGI GKGCMC 1 cut(s) 537
BamHI GGATCC 1 cut(s) 1727
BarI GAAGNNNNNNTAC 2 cut(s) 1614, 1646
BbsI GAAGAC 1 cut(s) 1759
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 389, 1033, 1036, 1239, 1242
BccI CCATC 5 cut(s) 854, 895, 1635, 1657, 1840
BclI TGATCA 2 cut(s) 709, 1018
BcoDI GTCTC 4 cut(s) 749, 880, 1304, 1757
BfaI CTAG 1 cut(s) 1361
BfmI CTRYAG 1 cut(s) 1029
BfrI CTTAAG 1 cut(s) 83
BfuAI ACCTGC 2 cut(s) 487, 567
BglII AGATCT 1 cut(s) 1549
BisI GCNGC 6 cut(s) 378, 738, 1047, 1050, 1253, 1256
BlsI GCNGC 6 cut(s) 379, 739, 1048, 1051, 1254, 1257
BmcAI AGTACT 1 cut(s) 1323
BmeT110I CYCGRG 2 cut(s) 281, 1325
BmiI GGNNCC 1 cut(s) 1729
BmrI ACTGGG 1 cut(s) 1694
BmsI GCATC 2 cut(s) 208, 1685
BmuI ACTGGG 1 cut(s) 1694
BpiI GAAGAC 1 cut(s) 1759
BplI GAGNNNNNCTC 2 cut(s) 1706, 1738
BpmI CTGGAG 1 cut(s) 1638
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 247, 1508
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 3 cut(s) 880, 1304, 1757
BsaJI CCNNGG 3 cut(s) 418, 779, 1767
BsaXI ACNNNNNCTCC 2 cut(s) 1636, 1666
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 893
Bse1I ACTGG 2 cut(s) 1700, 1773
Bse21I CCTNAGG 1 cut(s) 1723
Bse8I GATNNNNATC 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 418, 779, 1767
BseGI GGATG 4 cut(s) 635, 805, 1207, 1646
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 2 cut(s) 424, 893
BseMII CTCAG 4 cut(s) 854, 1056, 1737, 1752
BseNI ACTGG 2 cut(s) 1700, 1773
BseSI GKGCMC 1 cut(s) 537
BseXI GCAGC 5 cut(s) 389, 1033, 1036, 1239, 1242
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 238, 784, 897, 1772
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 2 cut(s) 281, 1325
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 2 cut(s) 424, 893
BsmAI GTCTC 4 cut(s) 749, 880, 1304, 1757
BsmFI GGGAC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 1533
BsnI GGCC 4 cut(s) 238, 784, 897, 1772
Bso31I GGTCTC 3 cut(s) 880, 1304, 1757
BsoBI CYCGRG 2 cut(s) 281, 1325
Bsp1286I GDGCHC 1 cut(s) 537
Bsp1407I TGTACA 1 cut(s) 503
BspACI CCGC 2 cut(s) 24, 737
BspANI GGCC 4 cut(s) 238, 784, 897, 1772
BspCNI CTCAG 4 cut(s) 853, 1057, 1736, 1753
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 1729
BspMI ACCTGC 2 cut(s) 487, 567
BspPI GGATC 4 cut(s) 609, 1365, 1722, 1735
BspTI CTTAAG 1 cut(s) 83
BspTNI GGTCTC 3 cut(s) 880, 1304, 1757
BsrGI TGTACA 1 cut(s) 503
BsrI ACTGG 2 cut(s) 1700, 1773
BssECI CCNNGG 3 cut(s) 418, 779, 1767
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 418, 779
Bst4CI ACNGT 5 cut(s) 433, 539, 794, 1404, 1543
Bst6I CTCTTC 2 cut(s) 747, 1742
BstACI GRCGYC 1 cut(s) 352
BstAFI CTTAAG 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 503
BstC8I GCNNGC 4 cut(s) 518, 631, 1294, 1737
BstDEI CTNAG 9 cut(s) 198, 204, 525, 840, 1065, 1231, 1723, 1743, 1761
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 4 cut(s) 635, 805, 1207, 1646
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 2 cut(s) 38, 1676
BstMAI GTCTC 4 cut(s) 749, 880, 1304, 1757
BstMWI GCNNNNNNNGC 6 cut(s) 16, 209, 218, 1157, 1261, 1270
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 1 cut(s) 537
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 5 cut(s) 389, 1033, 1036, 1239, 1242
BstV2I GAAGAC 1 cut(s) 1759
BstX2I RGATCY 3 cut(s) 1357, 1549, 1727
BstYI RGATCY 3 cut(s) 1357, 1549, 1727
Bsu36I CCTNAGG 1 cut(s) 1723
BsuRI GGCC 4 cut(s) 238, 784, 897, 1772
BtgZI GCGATG 2 cut(s) 873, 1458
BtsCI GGATG 4 cut(s) 635, 805, 1207, 1646
BtsIMutI CAGTG 1 cut(s) 535
BveI ACCTGC 2 cut(s) 487, 567
Cac8I GCNNGC 4 cut(s) 518, 631, 1294, 1737
CfoI GCGC 2 cut(s) 38, 1676
CseI GACGC 2 cut(s) 341, 353
Csp6I GTAC 3 cut(s) 504, 1322, 1631
CspCI CAANNNNNGTGG 2 cut(s) 897, 932
CviQI GTAC 3 cut(s) 504, 1322, 1631
DdeI CTNAG 9 cut(s) 198, 204, 525, 840, 1065, 1231, 1723, 1743, 1761
Eam1104I CTCTTC 2 cut(s) 747, 1742
EarI CTCTTC 2 cut(s) 747, 1742
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 418, 779
Eco147I AGGCCT 2 cut(s) 238, 784
Eco31I GGTCTC 3 cut(s) 880, 1304, 1757
Eco32I GATATC 1 cut(s) 1822
Eco57I CTGAAG 2 cut(s) 920, 1641
Eco81I CCTNAGG 1 cut(s) 1723
Eco88I CYCGRG 2 cut(s) 281, 1325
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoRI GAATTC 3 cut(s) 934, 1077, 1420
EcoRV GATATC 1 cut(s) 1822
EcoT14I CCWWGG 2 cut(s) 418, 779
ErhI CCWWGG 2 cut(s) 418, 779
FalI AAGNNNNNCTT 4 cut(s) 788, 820, 953, 985
FaqI GGGAC 1 cut(s) 418
FauNDI CATATG 1 cut(s) 1276
FbaI TGATCA 2 cut(s) 709, 1018
Fnu4HI GCNGC 6 cut(s) 378, 738, 1047, 1050, 1253, 1256
FokI GGATG 4 cut(s) 622, 812, 1214, 1653
Fsp4HI GCNGC 6 cut(s) 378, 738, 1047, 1050, 1253, 1256
FspBI CTAG 1 cut(s) 1361
GlaI GCGC 2 cut(s) 37, 1675
GluI GCNGC 6 cut(s) 378, 738, 1047, 1050, 1253, 1256
GsuI CTGGAG 1 cut(s) 1638
HaeIII GGCC 4 cut(s) 238, 784, 897, 1772
HgaI GACGC 2 cut(s) 341, 353
HhaI GCGC 2 cut(s) 38, 1676
Hin1I GRCGYC 1 cut(s) 352
Hin6I GCGC 2 cut(s) 36, 1674
HinP1I GCGC 2 cut(s) 36, 1674
HindIII AAGCTT 1 cut(s) 1385
HinfI GANTC 9 cut(s) 88, 105, 277, 361, 589, 820, 904, 1067, 1755
HphI GGTGA 2 cut(s) 875, 1861
Hpy166II GTNNAC 3 cut(s) 504, 535, 1207
Hpy8I GTNNAC 3 cut(s) 504, 535, 1207
Hpy99I CGWCG 2 cut(s) 180, 1805
HpyAV CCTTC 3 cut(s) 979, 1521, 1616
HpyCH4III ACNGT 5 cut(s) 433, 539, 794, 1404, 1543
HpyCH4IV ACGT 2 cut(s) 664, 1800
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 209, 218, 1157, 1261, 1270
HpyF3I CTNAG 9 cut(s) 198, 204, 525, 840, 1065, 1231, 1723, 1743, 1761
HpySE526I ACGT 2 cut(s) 664, 1800
Hsp92I GRCGYC 1 cut(s) 352
HspAI GCGC 2 cut(s) 36, 1674
Ksp22I TGATCA 2 cut(s) 709, 1018
LmnI GCTCC 2 cut(s) 56, 487
Lsp1109I GCAGC 5 cut(s) 389, 1033, 1036, 1239, 1242
LweI GCATC 2 cut(s) 208, 1685
MaeI CTAG 1 cut(s) 1361
MaeII ACGT 2 cut(s) 664, 1800
MaeIII GTNAC 6 cut(s) 78, 149, 427, 853, 1039, 1708
MflI RGATCY 3 cut(s) 1357, 1549, 1727
MhlI GDGCHC 1 cut(s) 537
MlyI GAGTC 4 cut(s) 82, 814, 1076, 1749
MmeI TCCRAC 2 cut(s) 34, 642
MnlI CCTC 6 cut(s) 103, 399, 1600, 1732, 1762, 1822
MroXI GAANNNNTTC 2 cut(s) 965, 1551
MseI TTAA 7 cut(s) 30, 84, 246, 606, 869, 1166, 1524
MslI CAYNNNNRTG 2 cut(s) 267, 1847
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 1533
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 6 cut(s) 16, 209, 218, 1157, 1261, 1270
NdeI CATATG 1 cut(s) 1276
NlaIV GGNNCC 1 cut(s) 1729
PaeR7I CTCGAG 1 cut(s) 1325
PceI AGGCCT 2 cut(s) 238, 784
PctI GAATGC 1 cut(s) 1533
PdmI GAANNNNTTC 2 cut(s) 965, 1551
PfeI GAWTC 5 cut(s) 105, 277, 361, 589, 904
PflMI CCANNNNNTGG 1 cut(s) 893
PkrI GCNGC 6 cut(s) 379, 739, 1048, 1051, 1254, 1257
PleI GAGTC 4 cut(s) 82, 814, 1075, 1749
PpsI GAGTC 4 cut(s) 82, 814, 1075, 1749
PshBI ATTAAT 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 1729
PsuI RGATCY 3 cut(s) 1357, 1549, 1727
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 3 cut(s) 505, 1323, 1632
RsaNI GTAC 3 cut(s) 504, 1322, 1631
RseI CAYNNNNRTG 2 cut(s) 267, 1847
SaqAI TTAA 7 cut(s) 30, 84, 246, 606, 869, 1166, 1524
SatI GCNGC 6 cut(s) 378, 738, 1047, 1050, 1253, 1256
ScaI AGTACT 1 cut(s) 1323
SchI GAGTC 4 cut(s) 82, 814, 1076, 1749
SduI GDGCHC 1 cut(s) 537
SfaNI GCATC 2 cut(s) 208, 1685
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 1325
SlaI CTCGAG 1 cut(s) 1325
SmiMI CAYNNNNRTG 2 cut(s) 267, 1847
SmlI CTYRAG 4 cut(s) 83, 226, 1325, 1487
SmoI CTYRAG 4 cut(s) 83, 226, 1325, 1487
SseBI AGGCCT 2 cut(s) 238, 784
SsiI CCGC 2 cut(s) 24, 737
SspMI CTAG 1 cut(s) 1361
StuI AGGCCT 2 cut(s) 238, 784
StyI CCWWGG 2 cut(s) 418, 779
TaaI ACNGT 5 cut(s) 433, 539, 794, 1404, 1543
TaiI ACGT 2 cut(s) 667, 1803
TaqI TCGA 5 cut(s) 108, 1269, 1326, 1545, 1803
TaqII GACCGA 1 cut(s) 1781
TatI WGTACW 2 cut(s) 503, 1321
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 5 cut(s) 105, 277, 361, 589, 904
Tru1I TTAA 7 cut(s) 30, 84, 246, 606, 869, 1166, 1524
Tru9I TTAA 7 cut(s) 30, 84, 246, 606, 869, 1166, 1524
TscAI CASTG 1 cut(s) 542
TseI GCWGC 5 cut(s) 377, 1046, 1049, 1252, 1255
TspDTI ATGAA 8 cut(s) 107, 690, 765, 937, 1118, 1293, 1409, 1449
TspGWI ACGGA 3 cut(s) 164, 1049, 1542
TspRI CASTG 1 cut(s) 542
Van91I CCANNNNNTGG 1 cut(s) 893
Vha464I CTTAAG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 533
VspI ATTAAT 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 5 cut(s) 934, 1034, 1077, 1420, 1598
XcmI CCANNNNNNNNNTGG 1 cut(s) 915
XhoI CTCGAG 1 cut(s) 1325
XmnI GAANNNNTTC 2 cut(s) 965, 1551
XspI CTAG 1 cut(s) 1361
ZrmI AGTACT 1 cut(s) 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.