AT2G22640

protein complex oligomerization

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9622997 .. 9624335
1339 bp
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UTR
Exon/CDS
Intron
AT2G22640.1

Sequence Viewer

Length: 258 bp
ATGGCGAAAGCTGGAGGGATCACGAACGCAGTAAACGTAGGAATCGCTGTTCAAGCAGATTGGGAGAATCGAGAATTTATCTCACATATCTCTCTTAATGTTCGTCGTCTCTTCGAATTCCTTGTTCAATTTGAATCAACCACAAAGAGCAAGTTGGCTTCTTTGAATGAGAAGTTGGATCTGTTGGAACGTCGCTTGGAAATGCTGGAGGTGCAAGTAAGTACCGCGACAGCAAATCCTTCTCTGTTTGCGACGTGA

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

5.75

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22640
fragaria_vesca FvH4_1g19040
malus_domestica MD01G1044400.v1.1
prunus_persica Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1
pyrus_communis pycom15g27120
rosa_chinensis RchiOBHm_Chr2g0110041
rosa_roxburghii Rroxscaffold_2G00133760
rosa_samantha Rh2BG227100
rosa_wichuraiana Rw2G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 26, 186
AcsI RAATTY 2 cut(s) 74, 116
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 4 cut(s) 53, 128, 134, 166
AjiI CACGTC 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 26, 186
ApoI RAATTY 2 cut(s) 74, 116
AsuII TTCGAA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 33, 227
Bpu14I TTCGAA 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 18, 178
BspACI CCGC 1 cut(s) 225
BspFNI CGCG 1 cut(s) 227
BspPI GGATC 2 cut(s) 26, 186
BspT104I TTCGAA 1 cut(s) 114
BssMI GATC 2 cut(s) 18, 178
Bst6I CTCTTC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 114
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 2 cut(s) 21, 181
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 18, 178
BstMWI GCNNNNNNNGC 2 cut(s) 53, 211
BstUI CGCG 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtrI CACGTC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 222
CviJI RGCY 2 cut(s) 11, 158
CviKI_1 RGCY 2 cut(s) 11, 158
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 20, 180
DpnII GATC 2 cut(s) 18, 178
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 1 cut(s) 87
GsuI CTGGAG 2 cut(s) 33, 227
HinfI GANTC 3 cut(s) 42, 67, 134
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 22, 71
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 3 cut(s) 108, 195, 256
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 3 cut(s) 36, 190, 254
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 211
HpySE526I ACGT 3 cut(s) 36, 190, 254
Kzo9I GATC 2 cut(s) 18, 178
LpnPI CCDG 1 cut(s) 191
MaeII ACGT 3 cut(s) 36, 190, 254
MalI GATC 2 cut(s) 20, 180
MboI GATC 2 cut(s) 18, 178
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 178
MluCI AATT 3 cut(s) 74, 116, 128
MmeI TCCRAC 2 cut(s) 156, 165
MnlI CCTC 2 cut(s) 8, 202
MseI TTAA 1 cut(s) 96
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 53, 211
NdeII GATC 2 cut(s) 18, 178
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 3 cut(s) 42, 67, 134
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 2 cut(s) 18, 178
SetI ASST 5 cut(s) 13, 39, 193, 213, 257
SfuI TTCGAA 1 cut(s) 114
Sse9I AATT 3 cut(s) 74, 116, 128
SsiI CCGC 1 cut(s) 225
TaiI ACGT 3 cut(s) 39, 193, 257
TaqI TCGA 2 cut(s) 70, 114
TasI AATT 3 cut(s) 74, 116, 128
TfiI GAWTC 3 cut(s) 42, 67, 134
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
XapI RAATTY 2 cut(s) 74, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.