Rroxscaffold_2G00133760

Oligopeptidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
71220645 .. 71225551
4907 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00133760.1

Sequence Viewer

Length: 264 bp
ATGGCTCGAGCAGGAGGCATCACAAACGCAGTGAATGTTGGAATCGCCGTCCAAGCTGATTGGGAAAACCGCGAGTTCATCTCCCACATTTCTCTCAACGTCCGCCGCCTCTTCGACTTCCTTGTCCAATTCGAGGCTACAACAAAGAGCAAATTGGCATCACTGAATGAGAAGCTTGATACTTTGGAACGGAAGCTAGAGCTCCTTGAAGTTCAAGTGGGTACTGCATCAGCTAACCCTTCTCTTTTTGCTCGTGATGTTTAG

Protein Analysis

87

Amino Acids

9.65

Weight (kDa)

5.75

Isoelectric Point (pI)

12.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22640
fragaria_vesca FvH4_1g19040
malus_domestica MD01G1044400.v1.1
prunus_persica Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1 Prupe.6G209300_v2.0.a1
pyrus_communis pycom15g27120
rosa_chinensis RchiOBHm_Chr2g0110041
rosa_roxburghii Rroxscaffold_2G00133760
rosa_samantha Rh2BG227100
rosa_wichuraiana Rw2G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 70, 103, 106
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 209, 215
AluBI AGCT 5 cut(s) 56, 175, 196, 202, 233
AluI AGCT 5 cut(s) 56, 175, 196, 202, 233
Alw21I GWGCWC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 6
BanII GRGCYC 1 cut(s) 204
BauI CACGAG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 32
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 6
BmsI GCATC 3 cut(s) 27, 167, 236
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 3 cut(s) 70, 103, 106
BspFNI CGCG 1 cut(s) 72
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 116
BstFNI CGCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstUI CGCG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 36, 161
Csp6I GTAC 1 cut(s) 222
CviJI RGCY 7 cut(s) 5, 56, 137, 175, 196, 202, 233
CviKI_1 RGCY 7 cut(s) 5, 56, 137, 175, 196, 202, 233
CviQI GTAC 1 cut(s) 222
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 99
LmnI GCTCC 1 cut(s) 207
LweI GCATC 3 cut(s) 27, 167, 236
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 99
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 128, 152
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 8, 119, 127
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 6
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 6
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 58, 102, 177, 198, 204, 235
SfaNI GCATC 3 cut(s) 27, 167, 236
Sfr274I CTCGAG 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 128, 152
SsiI CCGC 3 cut(s) 70, 103, 106
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 204
TaiI ACGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 7, 114, 132
TasI AATT 2 cut(s) 128, 152
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 2 cut(s) 36, 168
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 2 cut(s) 36, 168
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.